Rhodococcus sp. 21391: GO592_19530
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Entry
GO592_19530 CDS
T10971
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhzq Rhodococcus sp. 21391
Pathway
rhzq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhzq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GO592_19530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhzq03019
]
GO592_19530
03009 Ribosome biogenesis [BR:
rhzq03009
]
GO592_19530
Enzymes [BR:
rhzq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GO592_19530
Messenger RNA biogenesis [BR:
rhzq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GO592_19530
Ribosome biogenesis [BR:
rhzq03009
]
Prokaryotic type
rRNA helicases
GO592_19530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
QQZ12011
LinkDB
All DBs
Position
complement(4214302..4216062)
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AA seq
586 aa
AA seq
DB search
MSDIERDPEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTG
KTAAFAVPILSKIDLTQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSY
GVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILA
DTPEYKQVALFSATMPGAIRKISKQYMHDPVEITMKSKTSTASNISQRYVQVAHQRKLDA
LTRVLEVEDFEAMIIFVRTKQATEDLAERLRSRGFSASAINGDIVQAQRERTIGQLKSGA
LDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERH
LLKAIEKATRQPLAEMQLPSVDDVNAQRVAKFGDSITESLTSDNLALFRKMIEDYEQEHD
VPLADIAAALAVQSRDGEAFLMAPEPPPAPRREREPRERPARRFDDGPPTRSRGPEGQEL
ATYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALR
RTRISGVLIQLQPDSGPPSGRPRGGRDDRAGGKFQRDRDSRKRPRE
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatatcgagcgtgaccccgaaccccccacttttgccgacctcgacatcgatgat
cgggtcttgaaggcactgtccgatgtgggctacgagtcgccctcgccgatccaggcagcc
accattccgccccttctcgccggcaacgacgtcgtcggcctggcgcagaccggcaccggc
aagaccgctgcgttcgcggtaccgatcctctcgaagatcgacctgacgcagaagtcgccg
caggcgttggttctcgcgccgacgagggaactggcgctgcaggtcgcggaggcgttcggc
aagtactccgcccatattccgggcctgcacgtcctgcccatctacggcggtcagagctat
ggcgtccagttgtcggggctgcggcgcggcgctcacgtcgtggtgggcacgcccggtcgg
gtgatcgaccacctggagaagggcacgctcgacctgtccaagctctcgtacctcgtcctg
gacgaagccgacgagatgctgaagatgggtttccaggaggacgtcgagcgcatcctcgcc
gacactccggagtacaagcaggtggcgctgttctcggcgacgatgccgggggccatccgc
aagatctcgaagcagtacatgcacgaccccgtcgagatcacgatgaagtcgaagacgtcg
acggcctccaatatctcgcagcggtacgtccaggtggcgcaccagcgcaagctcgacgcc
ttgacgcgtgtcctcgaggtcgaggacttcgaggcgatgatcatcttcgtgcgcaccaag
caggccaccgaagacctcgcggaacgactgcgctcgcgcggattctccgcgtcggcgatc
aacggcgacatcgtgcaggcgcagcgtgaacggaccatcggccagctcaagagcggcgcc
ctcgacatcctcgtggccaccgatgtggccgcgcgtggtctggacgtggaccgcatctcc
cacgtcgtcaactacgatatcccgcacgacacggagtcgtacgtccaccggatcggccgc
accggtcgcgccgggcgcgccggcgaggcgctgctgttcgtggcgccgcgcgagcgtcac
ctgctcaaggccatcgagaaggcgacccgtcagccgctggccgagatgcagctgcccagc
gtcgacgacgtcaacgcgcagcgtgtggccaagttcggcgactcgatcaccgagagcctc
acgtccgacaacctggcgttgttccgcaagatgatcgaggactacgagcaggagcacgac
gtcccgctcgccgacatcgccgccgcgctcgcggtgcagtcgcgcgacggtgaggcgttc
ctcatggcgcccgaaccgccgcccgcgccccgccgcgagcgtgagccccgcgaacgcccg
gcgcgccgtttcgacgacggccccccgacgcggtcgcgtggaccggagggccaggagctc
gcgacgtaccgcatcgcggtcggcaagcggcaccgtgtggtgccgggtgcgatcgtcggt
gccatcgcgaacgagggtgggctgcggcgcagcgacttcgggcacatcagcatccgcccg
gaccacagcctggtggagttgcccgccgacctgtccagcgagaccctcgaagccctgcgc
cgtacccggatctccggtgtgctgattcagctgcagcccgattcgggtccgccgtcgggt
cggccgcgtggtggccgcgacgatcgggcaggcggaaagttccagcgcgaccgggacagc
cggaaaaggccgcgcgagtag
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