Rathayibacter iranicus: C7V51_00590
Help
Entry
C7V51_00590 CDS
T05878
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ria
Rathayibacter iranicus
Pathway
ria03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ria00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C7V51_00590 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ria03400
]
C7V51_00590 (mfd)
Enzymes [BR:
ria01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C7V51_00590 (mfd)
DNA repair and recombination proteins [BR:
ria03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C7V51_00590 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
IstB_IS21
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AZZ57248
UniProt:
A0AAD1AFJ4
LinkDB
All DBs
Position
128622..132233
Genome browser
AA seq
1203 aa
AA seq
DB search
MPLNEIISALSRASTFDDALAYAARDADFSVADGLRVPLLAGLLGRRAEAGRPQAALVVT
ATGRDSENIRASLGCVLPEADVVEFPAWETLPHERLSPSAEIVGRRLDALRRMKHWTGER
PLVVVASVRAALQPVADNLADIEPIRLVKGARGYDLGRISAELVDLAYARVDMVTRRGEF
AVRGGILDVFPAVAEHPSRVDFFGDEVDSIRGFSVADQRSLPGETDSVDLPPSRELLLVP
AVRQRAREMLHEFPSLSAMLAKIAEGIPVEGMESLAPALLDRLVPVSHYLPEGAAVAVFA
PERVATRAISLAETNREFLQAAWSAATAGAETPIDLASGEFISLGALCDSVKYSAPGAET
PDHPWWTMSTFRQGPAAGETDVLPEELGIDEILAVRIEGEPVPGFGASVEGALAHVRARL
ADGWSVVLTAPGTGTVERTDQVLAEHEVAARIVADLPADLETGLAYVVQASVDHGFEIEE
AKLALLTDTEFYGRTVGYDSRAVKKLASRRKNVVDPLQLTPGDYVVHATHGIGRFVELSQ
REVSSGGRNAVKTRREYLVLEYAPSKRGFPGDKLLVPTDQLDLLSRYVGGEAPALSKMGG
SDWSQAKSKARRAVRDIAVELVKLYSARMASRGHAFPPDTPWQRELEEAFPFAETPDQLT
VIDEVKADMERPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVRQHLE
TFQERFAGFPVHLRALSRFQSAKESKETIEGLADGTVDMVIATHRLLSDAIVFKDLGLLV
IDEEQRFGVEHKEKLKALKKNVDILSMSATPIPRTLEMAVTGIREMSTLATPPEERHPIL
TFVGPYSEKQISAAIRRELLREGQVFFVHNRVSTINRAASQLAELVPEARIAVAHGKLSE
AQLERIIVDFWERKFDVLVSTTIVETGLDIPNANTLIVDRADKYGLSQLHQLRGRVGRGR
ERAYAYLLYDETAPLSETAHDRLQTLSANSDLGGGMQIALKDLEIRGAGNLLGGEQSGHI
QGVGFDLYLRMIGEAVDTFRGEVAEGQTELRLELPVDARIPEEYVDSERLRLEAYQKLSA
ASSLTAKEGSIDLVVEELTDRYGELPEAVENLILVSRLRMRAQKAGLSDVVAMGSNVRVA
PAHLPDSIQVRLRRMYPSAKYLQQADAVVVPMPVLDGAALGDRALIQWVASLLDALFSEP
VSV
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
gtgcccctcaacgagatcatctcggcgctgtcgcgcgcctccacgttcgacgatgctctg
gcgtacgcggcgcgggacgccgacttctcggtggccgacggccttcgggttcctctgctc
gcggggctgctcgggcgtcgagcggaggcgggtcgcccgcaggccgcgctggtcgtgacg
gcgaccggccgcgactccgagaacattcgcgcctcgctgggctgtgtccttcccgaggcg
gatgtcgtcgagttccccgcgtgggagacgctcccgcacgagcgcctgagcccgagcgcc
gagatcgtcgggcgtcgcctcgacgcgctgcgaaggatgaagcactggacgggggagcgt
ccgctggtggtggtcgcctccgtgcgcgctgccctgcagccggtcgccgacaatctggcc
gatatcgagccgatccgcctggtcaagggggcacgcggctacgacctgggccgcatctcc
gccgagttggtcgacctcgcctacgcccgagtcgacatggtcacccgccgcggcgagttc
gcggtgcgtggcggcatcctcgacgtgttcccggccgtggccgagcaccccagccgggtg
gacttctttggcgacgaggtcgactccatccgcggcttctcggtggccgatcagcgctcg
ctcccgggcgaaacagactccgtcgacctaccgccgagccgcgagctgctgctcgttccc
gccgtgcggcagcgggcgcgcgagatgctgcacgaattccccagcctgtcggcgatgctc
gcgaagatcgccgagggcatcccggtcgagggcatggagtcgctggcgccggcgctgctg
gaccggctcgtcccggtctcgcactatctgccggagggggcggcggtcgccgttttcgcg
cccgagcgggtggccacccgcgccatcagcctcgccgagaccaaccgtgagttccttcag
gcggcgtggagcgcggcgaccgcgggggcggagacgccgatcgacctcgcctcgggcgag
ttcatctcgctgggcgcgctgtgcgactccgtgaagtacagcgctcccggcgccgagact
cccgaccacccctggtggacgatgagcactttccgtcagggccccgccgcgggcgagacc
gacgtgttgccggaggaacttggcatcgacgagatcctcgccgtgcggatcgagggcgag
cccgtccccggcttcggcgccagcgtcgagggcgccctcgcgcacgtccgcgcgcgcctc
gccgatggctggagtgtcgtcctgaccgccccgggcaccggcacggtcgagcgcaccgac
caggtgctcgccgaacacgaggttgccgcgcggatcgtcgccgacctgccagcagacctc
gagaccgggctggcctacgtcgtgcaggcgtcggtcgaccacggcttcgaaatcgaggag
gcgaagctcgccctgctcaccgacaccgagttctacggccgcaccgtcggctacgactcc
cgcgccgtgaagaagctcgcgtcgcgccgcaagaacgtcgtcgatccgttgcagctcacc
cccggcgactatgtcgtgcacgccacgcacggtatcggccgcttcgtcgaactctcgcag
cgcgaggtctccagcggcgggcgcaacgcggtgaagactcgccgcgagtacctggtgctc
gagtacgcgcccagcaagcgcggcttccccggcgacaagctcctcgtccccaccgaccag
ctcgacctgctctcgcggtacgtcggtggcgaggccccggcactgagcaagatgggcggg
agcgactggtcacaggccaagagcaaggcgcgtcgcgcagtccgtgacatcgccgtcgag
ctggtcaagctctactccgcacggatggcctcgcgcgggcacgcgttcccgccggacacg
ccgtggcagcgggagttggaggaggcgttcccgttcgctgagactcctgatcagctgacc
gtgatcgacgaggtgaaggccgacatggagcggccgattccgatggaccgcctgctctcg
ggcgacgtcggcttcggcaagactgaggtcgccgtccgcgccgcgttcaaggcgatccag
gacggcaagcaggtcgcgatgctcgtgccgaccacgctgctcgtccgccagcacctcgag
acgttccaggagcgcttcgccggcttccccgtgcacctgcgggcactcagccggttccag
agtgcgaaggagtcgaaggagacgatcgagggcctcgccgatggcaccgtcgacatggtc
atcgcgacgcaccggctcctgagcgacgccatcgtcttcaaagacctcggcctgctcgtg
atcgacgaggagcagcgcttcggcgtcgagcataaggagaagttgaaggcgctgaagaag
aacgtcgacatcctctcgatgagtgccacgccgatcccgcggacgctcgaaatggcggta
accggtatccgcgaaatgtcgactctcgctactccgcctgaggagcgccacccgatcctc
accttcgtcggcccgtactccgaaaagcagatctccgctgcgatccgccgtgagctgctg
cgcgagggccaggtgttcttcgtgcacaaccgggtctcgacgatcaaccgtgccgcctcc
cagctcgccgaactggtgccggaggcgcgcatcgccgtcgcccacggcaagctcagcgaa
gcccagctggagcggatcatcgtcgatttctgggagcgaaagttcgacgtgctcgtctcg
accaccattgtcgagaccggtcttgatatcccgaacgcgaacacgctcatcgtcgaccgc
gccgacaaatacggactttcgcaattgcaccagctgcgcgggcgagttggtcgcgggcgc
gagcgcgcctacgcctacctgctctacgacgagacggcgccgctcagcgagaccgcgcac
gaccggctacagaccctctccgccaactccgacctcggcggcggcatgcagatcgcgctc
aaagacctcgagatccgcggcgccggcaatctgctcggcggcgagcagtccgggcacatc
cagggtgtggggttcgacctctacctgcggatgatcggcgaggctgttgacacgttccgc
ggcgaggtcgccgaggggcagacggagctgcggctcgagctgcccgtcgatgcgcggatc
ccggaggagtacgtcgatagcgagcggctgcggctggaggcgtaccaaaagctctcggcc
gcctcctcgctgaccgcgaaggaggggagcatcgacctggtggtcgaggaactcactgac
cgctacggtgagctgcccgaggcggtggaaaacctcatcctggtctctcggctgcggatg
cgcgcgcagaaggcgggcctgagcgacgtggtcgcgatgggctcgaacgtgcgcgtcgct
cccgcacacctgcccgactcgatccaggtgcgcctgcgccggatgtacccgagtgcgaag
tacctccagcaggccgatgcagtcgtcgtgccgatgccggtgctcgacggcgccgcgctg
ggcgaccgcgccctcatccagtgggtcgcatcgctcctggacgccctgttctccgagccg
gtctccgtctaa
DBGET
integrated database retrieval system
