Rathayibacter iranicus: C7V51_04065
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Entry
C7V51_04065 CDS
T05878
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
ria
Rathayibacter iranicus
Pathway
ria03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ria00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C7V51_04065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ria03400
]
C7V51_04065
DNA repair and recombination proteins [BR:
ria03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C7V51_04065
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C7V51_04065
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_21
AAA_16
RsgA_GTPase
nSTAND1
AAA_25
APS_kinase
AAA_22
nSTAND3
NACHT
DnaJ_CXXCXGXG
SLFN-g3_helicase
ATPase
NB-ARC
MeaB
Viral_helicase1
NTPase_1
IIGP
DUF87
Motif
Other DBs
NCBI-ProteinID:
AZZ57308
LinkDB
All DBs
Position
873349..876177
Genome browser
AA seq
942 aa
AA seq
DB search
MVVSGARVHNLQNVDLEIPRDSMVVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQ
FLGQVDRPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEIFDYMRLLWARIGVPHCPIC
SERISAQTVQQIADQLMELESGTRYQILSPVVSQKKGEFVDLFKELSAGGYSRAMVDGTL
VQLSDPPTLKKQYKHDISVVVDRLVAGPDILGRLTDSLETALRLTDGIVQINFVGGEGQG
AWTTYSEKLSCPNNHPISLTEIEPRTFSFNAPFGACPECSGLGTRMSVDDELLLGDPDLS
IAEGVIIPWTTQGKGLFQYYEKLLDGLSRDLGFSLATPWKRLSTEVQQAVLHGDNFEVKV
KWKNRYGREMSYTSGFEGVVPYIERQFVQAETDVQRTRWSEFLREVPCPVCKGSRLKPEV
LAVLVHGASIADVADLSLGDAQDFMSRLELTDREAHIAAQVLREIRARIDFLIEVGLNYL
NLSRAAASLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNRRLIDTLIKLRDLG
NTLIVVEHDEDTIRTADWIVDIGPGAGVNGGKVVHSGSYESLLENTHSLTGDYISGRRAI
DVPKKRRRIDRKRMIKVVGANANNLRKVDAEFPLGTFVAVTGVSGSGKSTLVNDILYRVL
ANQLNGARKVPGKHTRVTGLENLDKVVHVDQNPIGRTPRSNPATYTGVFDRIRNLFAETT
EAKARGYLPGRFSFNVKGGRCEACSGDGTIKIEMNFLPDVYVSCEVCGGARYNRDTLTVH
YKGKNIAEVLDMPIAEAADFFEPITAIHRFLKTLVEVGLGYVRLGQSATTLSGGEAQRVK
LATELQRRSNGRSVYVLDEPTTGLHFEDVRKLLLVLNGLVDKGNTVITIEHNLDVIKSAD
WLIDMGPEGGAGGGQIVAVGTPEHVAEVEGSHTGMFLAEILR
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
ctggtggtgagtggagcgcgggtgcacaacctgcaaaacgtcgacctcgagattccacgt
gactcgatggtggtgttcaccggtctctcgggctccggcaagtcatccctcgcgttcgac
acgatcttcgccgagggacagcggcggtacgtcgagtccctctccgcctatgcccgccag
ttccttgggcaagtggaccggcccgatgtcgacttcatcgagggtctgagccccgccgtc
tcgatcgaccaaaagtcgacgaaccgcaacccgcgctccaccgtcggcacgattaccgag
atcttcgactacatgcgcctgctctgggcgcgcatcggagtgccgcactgcccgatctgc
agcgagcggatctcggcacagacggtccagcaaatagccgaccagctgatggaactcgag
tccggcacccgttaccagatcctcagccctgtcgtctcccagaaaaaaggcgagtttgtc
gacctcttcaaggagctgtccgccggcggttactcccgcgcgatggtcgacgggaccctc
gtccagctcagcgacccgcccacgctcaagaagcagtacaagcacgatatctcggtcgtg
gtcgatcgcttggtcgctggccccgacatcctcggccgcctcaccgactcgctcgagacc
gcgctgcgcctcaccgatgggatcgtccagatcaacttcgtgggcggcgagggccagggt
gcctggaccacctactcggaaaaactctcctgtcccaacaatcaccccatctccttgact
gagatcgagccgcgcacgttctccttcaatgccccgttcggcgcctgccccgagtgctcc
ggtctcggtacccgcatgtccgtcgatgacgagctgctactgggcgatcccgacctcagt
attgcggagggcgtcatcatcccctggaccacgcagggcaagggcctgttccagtactac
gaaaagctgctcgatggcctctctcgtgatctgggcttctcgcttgcgacaccgtggaag
cgtctcagcaccgaggtgcagcaggcagtgcttcatggcgacaacttcgaagtcaaagtc
aagtggaaaaaccgctatggccgcgagatgagctatacctccggcttcgagggcgttgtg
ccctatatcgagcgccagttcgtgcaggccgagaccgacgtccagcgcacccgctggtcc
gagttcctccgcgaggtaccctgtccagtctgtaagggctcccggctcaagccggaggtt
ctcgccgtcctcgtccatggcgcgagcatcgcggatgtcgctgacctcagcctcggcgac
gcgcaagacttcatgagcaggctcgagctgaccgaccgtgaggcccacatcgcggcgcag
gtgctccgcgagatccgtgcccgcatcgacttccttatcgaggtcggcttgaactacctc
aatctctcgcgagccgcagcgtccctttccggcggcgaggcgcagcgcatccgcctggcg
acacagatcggctccgggcttaccggcgtgctctatgtcctcgacgagcccagcatcggg
ctacatcagcgcgataaccgccgtctcatcgacacactgatcaagctgcgcgacctcggc
aatacgctgatcgtcgttgagcacgacgaggacacgatccgcaccgccgattggatcgtc
gacatcggcccgggggctggcgtcaacggcggcaaggtcgtgcactcgggttcgtatgag
tcgctgctcgagaacacgcactcgctcactggcgactacatttccggccgcagggcaatc
gatgtaccgaagaagcgccgcaggatcgatcgcaagcgaatgatcaaggtcgtcggcgcg
aacgccaacaatctgcgcaaggtcgatgcggagtttccgctcggcacgttcgtcgcggtg
accggcgtctcaggatcgggcaagagcacgctcgtcaatgacatcctgtatcgggttctc
gccaatcagttgaacggcgctcgtaaggtgccgggcaagcacacccgcgtcacaggcctc
gagaacctcgacaaggtcgtgcatgtcgatcagaatccgattggccgcactccgcgctca
aaccccgccacgtataccggcgtctttgaccgcatccgcaacctcttcgccgagacgacg
gaggcgaaggcccgcggctacctgcccggccgtttcagcttcaacgtcaagggcggccgc
tgcgaggcatgttcgggcgatggcaccatcaagatcgagatgaactttctgcccgacgtc
tatgtctcgtgcgaagtctgcgggggagcgcgctataaccgcgacactctgaccgtgcac
tacaagggcaagaacattgccgaggtgctcgacatgccgatcgccgaggcggccgacttc
ttcgagccgatcaccgcgatccaccggttcctgaagacgctggtcgaggtcggcctcggc
tacgtgcgcctcgggcagagcgcgacgaccctgtccggtggcgaggcccagcgggtcaag
ctcgcgaccgaacttcagcgtcgctcgaacggacgcagtgtctacgtgctcgacgagccg
accacgggtctgcatttcgaggatgtccgcaagctgcttctcgtcctgaacgggctggtc
gacaagggcaacaccgtcatcaccatcgagcacaatctcgacgtgatcaagtccgctgac
tggctgatcgacatgggtccagaggggggagcgggtggtggtcagatcgtcgcggtcggc
actcccgagcacgtagccgaggtcgagggcagccacacgggcatgttcctcgccgagatc
cttcgctga
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