Rathayibacter iranicus: C7V51_04755
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Entry
C7V51_04755 CDS
T05878
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ria
Rathayibacter iranicus
Pathway
ria03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ria00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7V51_04755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ria03019
]
C7V51_04755
03009 Ribosome biogenesis [BR:
ria03009
]
C7V51_04755
Enzymes [BR:
ria01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C7V51_04755
Messenger RNA biogenesis [BR:
ria03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C7V51_04755
Ribosome biogenesis [BR:
ria03009
]
Prokaryotic type
rRNA processing factors
C7V51_04755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AZZ55276
UniProt:
A0AAD1ELP9
LinkDB
All DBs
Position
complement(1028920..1031538)
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AA seq
872 aa
AA seq
DB search
MVEDNSTSGSDPDRDEPRSGARKISRLFGGRRMTRRTESSAPATGETIIDSTETDQTGND
ETGRAEASTDVSTQAPGQAPEASTAAPEPSTLAGTASAPALLPVTAEGEEPRRPVLPPAS
LLFQAPVLPDYVELTPLPPRGAPLGLRDERDERDAPSDEQGSIRRRSRRRSGENDRGGSD
DPEQTVVRVRQPREPREAREPELITEPQRIKGSTRLEAKKQRRRDGRDAGRRRTVVTESE
FLARREAVDRVMVVRSRQDSIRIGVLEDGVLAEHYVARSQEASLIGNVYLGRVQNVLPSM
EAAFVDIGRGRNAVLYSGEVDWDAANNAGGPRRIELALKPGDRVLVQVTKDPVGHKGARL
TSQISLPGRYLVYVPNGSMNGISRKLPDTERARLKKILKEVLPENVGVIVRTAAEGATEE
QLTVDVERLTAQWTALSDKAATGQAPALLHSEPDLLIKIVRDVFNEDFETMVIAGDDARE
TIELYLSQVAPDLLERVEIYTGEQDAFDEFRITEQIEKALERKVWLPSGGSLVIDRTEAM
TVVDVNTGKFVGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDL
VLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSENCEVCAGRGVIVHHDP
VLKHRSTAAPQQEQRRRGKGGDQQPASGRSNGASTAAAKSVSTHAITDDAKNALAQIAAS
TIQPQAARQATEEVAELVEDATETEPIAAPQEAGEKQLAEPASRGERPVRGERRRRSRDR
EPRQESAEAPVEQMADFAAAAILDIPIPPAPVTPPRRVRSDVAEHLLDSVLDALPAPKQP
GQGRAKSRRVTTAALTGVAVIPEHTPRRADQQ
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggtggaagacaacagcacgagcggatccgatccggaccgcgacgagccccgcagcggg
gccagaaagatcagccgcctcttcggtggccgccggatgacccggcggaccgagtcgagc
gcgccagcgacaggggagaccatcatcgatagcaccgagaccgaccagaccggcaacgac
gagaccgggcgggcggaggcttccaccgatgtgtcgacgcaggcgcccgggcaggcgcct
gaggcctccacagcagcgcctgagccgtcgacgctggcaggtaccgcgtccgcccccgca
ctgctaccggtgaccgctgagggggaggagccgcgccggcccgtcctgccgcccgcgtca
ctcctgtttcaggcccccgtcctacccgattacgtcgagctgactcctctacccccgcga
ggcgccccgctcggtctccgcgacgagcgcgacgagcgggacgctccttcggacgagcag
ggctcgatccggcgccgctcgagacgccgcagcggcgagaacgatcgaggtgggtcggat
gatcctgagcagaccgtcgtcagggtccgccagccgcgcgaaccccgcgaggcgcgcgaa
cccgagctgatcaccgaaccgcagcgcatcaagggttctacccggcttgaggccaagaag
cagcgccgtcgcgacggccgcgacgccggccgccgtcggaccgtcgtgaccgagtccgag
ttcctcgcgcgccgcgaggccgtcgaccgcgtcatggtcgtgcgttcgaggcaggacagc
atccgcatcggcgtgctcgaagacggcgtgctcgccgagcactacgtcgcccgctcacag
gaggcgtcgcttatcggcaacgtctacctcggtcgcgtgcagaacgttttgccgagtatg
gaggccgccttcgtcgacattgggcgcggtcgcaatgccgtgctgtactccggcgaggtc
gactgggacgccgcgaacaacgccggtggcccccgccggatcgaactcgcactcaagccc
ggcgaccgtgtcctcgtgcaggtcacgaaggacccggtcggtcacaagggcgcccgcctc
accagccagatctcactgcccggccgctacctcgtgtacgtgcccaacggatcaatgaac
ggcatctcgcgcaagcttcccgacacagagcgcgcgcgcctcaagaagatcctcaaggaa
gtcctgcccgagaacgtcggcgtcatcgtccgcacagccgctgaaggtgccaccgaggag
caactcacggtggacgtcgaacgcctcacggcgcagtggaccgcgctgagcgacaaggcc
gcaacgggccaggcgccggcccttctccacagcgagccggacctcctgatcaagatcgtg
cgcgacgtcttcaacgaggacttcgagacgatggtcatcgcgggcgacgacgcccgcgag
acgatcgagctctacctcagtcaggtcgctcccgacctgctcgagcgcgtcgagatctac
accggcgagcaggacgccttcgacgagttccgcatcacggagcagattgagaaggcgctg
gagcgcaaggtgtggctgcccagcggcggctcgctcgtgatcgaccgcaccgaggccatg
accgtcgtcgacgtcaacaccggcaagttcgtcggctccggcggcaacctcgaagagacg
gtcaccaagaacaatctcgaggcggcggaggagatcgttcgccagctgcggctgcgcgac
atcggcggcatcatcgtcgtcgacttcatcgacatggtgctcgagtccaaccgcgacctc
gtcctgcggcgcctggtcgagtgcctgagccgcgaccgtacgaagcaccaggtggccgag
gtcacctcgctcgggctcgtacagatgacccgcaagaagttggggctcggtctgctcgag
acgttcagcgaaaactgcgaagtctgcgcgggccgcggtgtcatcgtgcaccacgatcct
gtgctgaagcatcgctcgaccgcggcgccgcagcaggagcagcgccggcgcggaaagggc
ggcgatcagcagcccgcctccggccgctcgaacggcgcgtccacggctgccgccaagtcg
gtcagcactcacgccattaccgatgacgccaagaacgccctcgcgcagatcgccgcaagc
accattcagccgcaggcagcgcgccaggctacggaggaagtggccgaactggtcgaggac
gccaccgaaaccgagccgatcgccgctccccaggaggcgggagagaagcagctcgccgag
cctgcgtcccgtggggaacgtcccgttcggggagagcggcggcgccgcagccgtgaccgc
gagcctcgccaggagagcgccgaggcgcctgtcgagcagatggccgactttgccgcggcg
gcgattctcgacatcccgatcccgccggcgcctgtcacgccaccgcgtcgggtacgcagc
gacgtggccgagcacctgcttgactccgtgctcgatgcgctgcccgcgccgaagcagccc
ggtcagggtcgagccaagagccgccgggtcaccacggccgcgctcacgggtgtcgccgtc
atccccgagcacacgccgcggcgcgccgaccagcaatag
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