Rathayibacter iranicus: C7V51_06860
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Entry
C7V51_06860 CDS
T05878
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ria
Rathayibacter iranicus
Pathway
ria03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ria00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7V51_06860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ria03021
]
C7V51_06860
03019 Messenger RNA biogenesis [BR:
ria03019
]
C7V51_06860
Transcription machinery [BR:
ria03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C7V51_06860
Messenger RNA biogenesis [BR:
ria03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C7V51_06860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
AAA_22
NACHT
VWA_2
Motif
Other DBs
NCBI-ProteinID:
AZZ55636
LinkDB
All DBs
Position
complement(1473634..1475934)
Genome browser
AA seq
766 aa
AA seq
DB search
MTDVNTHGSTVDLTADLSVLRVAELQTLATRLGLGGASKLRKGELVQAISDLRAWTAAEA
AAKPDAVASETETTSSAVEPDAGSVAPEIDATTVEAEPADMAEQATPEPEAPADLPTSVE
STEAETADVLEQAAPTVEETAASVAESAPVELELPAAAELVGEPAERTPRRRSSRRASSG
TVAAGEHLNVPGGSGVESLIPDLPVIEQDRDAEPAAKPVIEIELPNGPESDDSSRDGGQR
ERRGRRRSRGGSAEQNGDGESSPAESEPEADTSEQQEQQGGDQQGTGRGRNRRNRNRNRG
DDRQNDAPQNGAAQNQPQNGQGSRTAQAEGQQTPQQGGSGPQQNAQQAEGEDGRRSRYRD
RKRRGGAVGDDIEPEISEDDVLIPAAGILDVLDNYAFVRTTGYLPGVSDVYVSLGQVKKY
NLRKGDAVVGAIRQPRESEGGGRQKYNAIVRVDSINGQSVDEAATRVEFQNLTPLYPTER
LRLETEPGKLTQRIIDLVAPIGKGQRGLIVAPPKAGKTIVLQQIANAIVQNNPEVHLMVV
LVDERPEEVTDMQRTVRGEVVASTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSI
TRLGRAYNVTAPASGRVLSGGVDASALYPPKKFFGAARNIENGGSLTILATALIETGSKM
DEVIFEEFKGTGNMELRLSRHLADKRIFPAVDVNASGTRREEMLLSADEVKITWKLRRAL
AGLDQQQALEIILSRLKETTSNVEFLMQVSKSAVGPTTAGHTNGHH
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
gtgacagatgtcaacacccacggctcgaccgtggatctcacggccgatctttcggtcctc
cgcgtcgccgagcttcagacgctcgcgacgcgactcggcctcggcggtgcctccaagctc
cgcaagggcgaacttgtgcaagccatttcggacctccgggcctggacggcggccgaagcg
gcggccaagcccgacgccgtcgcttcggagaccgagacgacgagcagcgctgtggagcct
gacgccggcagcgtcgctccagagatcgatgccacgactgtcgaggccgagccggccgac
atggccgagcaggcgactcccgagcccgaggcgccggccgatctgccgacgtccgtcgag
agcacggaggccgagactgccgacgtcctcgagcaggccgcgccgaccgtcgaggagacg
gctgcatcggtcgctgagtcggctccggtcgaactcgaactccccgcggccgccgagctt
gtcggtgagcccgcggagcgcaccccgcgccgccgcagttcgcgtcgcgcctccagcggc
accgtcgccgccggtgagcacctcaacgttcccggagggtctggcgtcgagtcgctgatc
cccgacctccccgtcatcgagcaggaccgtgacgctgagccggccgcgaagccggtcatc
gagatcgagttgccaaacgggcccgagtccgacgactcgtctcgcgacggcggccagcgc
gagcgccgcggacgccgacgcagccgcggcggcagtgccgagcagaacggtgacggcgag
tcttcaccggccgagtccgagcccgaggccgatacctccgagcagcaggagcagcagggc
ggcgaccagcagggcaccggccgcggtcgcaatcgccgcaaccgtaaccgcaaccgcggg
gacgatcgccagaacgacgctccccagaacggcgccgcgcagaaccagccgcagaacggc
cagggctcgcggaccgcacaggccgagggccagcagaccccgcagcagggcggatctggg
cctcagcagaatgctcagcaggccgagggcgaggacggccgtcgcagccgttaccgcgac
cgcaagcgccgcggcggagctgtcggcgatgacatcgagcccgaaatcagcgaggatgac
gtcctcattccggctgccggcatcctcgatgtcctcgacaactacgccttcgtgcgcacc
accggttacttgcccggcgtcagcgacgtctacgtctcgctcggccaggtcaagaagtac
aacctgcgtaagggggacgcggttgtcggcgccatccgccagccccgcgagagcgaaggc
gggggacgccagaagtacaacgcgatcgtccgggtcgactcgatcaacggccagagcgtc
gacgaggcggcaacgcgcgtggagttccagaacctcactccgctctacccgaccgagcgc
ctgcgcctcgagacggagccgggcaagttgacccagcggatcatcgacctggtcgccccg
atcgggaagggccagcgcggcctgatcgtcgctccgcccaaggccggcaagacgatcgtc
ctgcagcagatcgccaacgcgatcgtccagaacaaccccgaggtgcacctcatggtcgtc
ctggtcgacgagcgtccggaggaggtcaccgacatgcagcgcaccgtgcgcggcgaggtc
gtcgcctccaccttcgaccgcccggccgaggaccacaccaccgtcgccgaactcgccatc
gagcgcgccaagcgcctggtcgagctgggccacgacgtggtcgtgcttctcgactccatc
actcgcctgggtcgcgcctacaacgtgaccgcgcccgcctcgggccgcgtgctctcgggc
ggcgtggacgcctcggcgctctacccgcccaagaagttcttcggcgccgcgcgcaacatc
gagaatggcggctccctcaccatcctcgccacggcgctcatcgagaccggttcgaagatg
gacgaggtgatcttcgaggagttcaagggcaccggcaatatggagttgcgtctgtcgcgt
cacctcgccgacaagcgcattttccccgcggtcgatgtgaacgcctcgggtactcgtcgg
gaggagatgctgctcagcgcggacgaggtcaagatcacctggaagctgcgtcgcgccctc
gccgggctcgaccagcagcaggcgctcgagatcatcctgtcgcgcttgaaggagacgacc
tcgaacgtcgagttcctgatgcaggtctcgaagtcggccgtcggccccaccacggccggt
cacaccaacggccaccactag
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