KEGG   Rickettsia sp. MEAM1 (Bemisia tabaci): BA173_04895
Entry
BA173_04895       CDS       T05695                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ric  Rickettsia sp. MEAM1 (Bemisia tabaci)
Pathway
ric03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ric00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BA173_04895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ric03021]
    BA173_04895
   03400 DNA repair and recombination proteins [BR:ric03400]
    BA173_04895
Enzymes [BR:ric01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BA173_04895
Transcription machinery [BR:ric03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BA173_04895
DNA repair and recombination proteins [BR:ric03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BA173_04895
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 RnfC_N YqfD
Other DBs
NCBI-ProteinID: ASX28150
UniProt: A0A249E490
LinkDB
Position
968312..972430
AA seq 1372 aa
MSVVNFYGQLSDTQQFDQIRINIASPEQVRSWSFGEVIKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDIEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVVQQMLKELDFPTLKQELYEELQNTTSEVKKKKLVKRLKLVEDFLESENKPEWMIMN
VLPVMPPELRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKPEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVLMMSTNNILSPANGRPIIVPDKDIVLGLYYLTLAFDHEVGEGMMFSDLTEMEHALYNK
FITIHTKIKYRRNQLNAEGKIVPVIVDTTYGRLMVGELLHSNPNIEYKFINKPLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYSYSSGISFGMDDMVVPKSKIVHIDETQLEIK
KFEQQYSNGLITYGEKYNKVIDAWSRCTDRVANDMMKEIAKPPVSDDSNQQKINSIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIPTPIIANFKEGLTVFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCNTDKGIEVKSIIEGGEVIVPLAEMILGRTAAI
NIYHPVTNDLILTKGELINESKLEQIESAGLDRIMIKSVLTCESSTGICAICYGRDLATG
SLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSFVEASYDAKVKILSRNVV
INSEERKIVMSRNCELLLLDNNGNEKARSKIPYGARLLVDEGDMVTKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISVRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDAKGEI
IMLSNGLEARYYLPVGAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELFEAR
RPKDHAVIAEIDGRVEFGKDYKSKRRIIIHPVDGSMGLEYMVPKGKYVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVELLASYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEITD
SGGTTLLVGEKIDRREFDEVNEKAIKNGLRPADAQLILQGITKSSLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGFFMDKMHKVAAKLDEENA
NT seq 4119 nt   +upstreamnt  +downstreamnt
atgagtgtagtaaatttttacggacaattaagtgatactcaacaatttgatcagataaga
attaatatagcaagtccagaacaagtacgttcatggtcttttggtgaagtaataaaacct
gaaactattaattatcgtacttttaagcctgagaaagatggtttattttgtgcaagaatt
tttggtccagtaaaagattatgaatgtctttgcggcaagtataagcgaatgaaaaaccgc
ggtattacttgtgaaaagtgtggtgttgaggttactgtttctagagtaagacgtgaaaga
atggggcatatagaacttgcggctcccgttgctcatatttggtttctaaagtctcttcct
tcaagaattagtacgcttcttgatatgacgatgcgagatatagaaaaaattctttatttt
gaaaattatgttgtagttgatcctggattatctattctacaaaaaggcgagcttttaact
gaagaagaactgcaaaaagcaaaggataaatacggggaagatgcatttactgcgtctatt
ggtgcagaagtagtacaacaaatgctaaaagagcttgatttcccaacattaaagcaagag
ttatacgaagaactacaaaatacgacttcagaagtaaaaaagaaaaagttagtaaagcgt
ttaaaattagtagaggactttttagaatctgaaaataagccagaatggatgattatgaac
gtgttgccggtcatgcctcctgaacttagaccgcttgttatgttagatggcggaagattc
gctacttcagatcttaatgagctatatagaagagtaattaatagaaataatcgtttaaag
aagcttatagagtcaaaagcacctgatataattgttagaaatgaaaaaagaatgctgcaa
gaagcagtagatgcgttatttgataacggacgccgcggtagagcagcaaaaaatgctaat
aagcgtccgtttaagtccttaagtgatatgctgaaaggtaagcaaggtcgtttccgtcaa
aacttacttggtaaaagggtagactactcaggacgttcagttatcgtagtaggacctgag
cttaaacttcatcagtgcggtttacctaagaaaatggctctagaattgttcaagccgttc
atttattcaaagcttgaattatatggtattgctacaactattaaagcagctaaaagaatg
gttgaggctgaaaagcctgaagtttgggatgtgcttgaggaagttataagagaacaccct
gtattacttaacagagctccgacattgcaccgtttgggtattcaggcatttgagccgtta
ttaattgaaggtaaagcaatacagcttcacccgcttgtttgtgctgcttttaatgcggac
tttgacggtgatcaaatggctgtacatattcctttatcgattgaagcccagcttgaagct
agggtacttatgatgtctactaataatatcttaagccctgctaatggacgtcctattatt
gtaccagataaagatatagtactcggcttatattatttaacgcttgcttttgatcatgag
gtaggtgaggggatgatgttctcagacctaactgaaatggagcatgctctatataacaaa
tttataacgattcatactaagataaaatatcgtcgtaatcagttaaatgctgagggcaaa
atagttcctgtaatagttgatactacttatggaagattaatggttggtgagttgttgcat
tctaatcctaacatagaatataagtttattaataagcctttaactaaaaaggatatatct
ctagtaatagatttagtctatcgtcactgcggtcaaaaagctacagtaatttttgctgat
cagttgatgaaacttggtttcaaatattcttattcttcaggcatttcttttggtatggat
gatatggttgtaccaaaatctaaaattgttcatatcgatgaaacacagcttgagattaag
aaatttgagcagcaatattcaaatggtttaattacttacggcgaaaaatataacaaggta
attgatgcatggtcaagatgtactgatagagtagctaatgacatgatgaaagaaattgct
aaaccacctgttagtgatgattcgaatcaacagaagataaactctatatatatgatggct
atttcaggtgctagaggatctttccagcagattaaacagcttggtggtatgcgtgggctt
atgactaaatcaaatggtcaaattataccaacacctattatcgctaactttaaggaagga
ttaacagtatttgaatgctttaactctgctaacggaatgcgtaaaggacaaatagataca
gctttaaaaaccgcaagctcaggttacttaacaagaaaattagtggatgttgcacaagat
tgtattattactgaaaaagattgtaacaccgataagggtattgaagtaaagagtattata
gaaggtggtgaagtaatagtgcctttagctgaaatgattctaggtcgtacggcggctatt
aatatatatcatccggtaactaatgatttaattcttaccaaaggtgaattaattaatgag
tctaaattagagcaaatcgagtctgcaggtttagatagaattatgattaagtcagtatta
acttgtgaaagttccaccggtatatgtgctatatgttatggtagagatcttgcgactggt
tcgttagtttctgaaggggaagctataggggtgatcgctgctcaatctatcggtgagcct
ggtacacagcttacaatgagaactttccacatcggaggagcagcaacgaaaggagcagaa
gtatcttttgtagaagcttcatatgatgcaaaagtaaaaattcttagccgtaacgtggtt
attaattccgaagaacgcaaaattgttatgagccgtaactgtgagttattattacttgat
aataacggcaatgaaaaagctcgtagtaaaatcccatatggtgctagattacttgttgat
gagggcgatatggttactaagacgcaaaagcttgcagaatgggatccatataccatacct
attattactgaaaaatctggtaaggtattattcaaagatatggttgagggaatttcagtt
cgtgatgtaactgatgaagcaactggtattccaagcaaagttatcattgaatcaaaacag
tattcacgtggagccgaactaagaccacgaatccagcttcttgacgctaagggtgaaatt
atcatgttatcaaatggtttagaagcaagatattatttaccagttggagcggttttaagt
gtagaagatggggtgcaaatatcagtaggtgatataattgcacgtattcctaaagagtca
actactactaaggatattactggtggtttaccaagagtagctgagcttttcgaagcaaga
cgtccaaaagatcatgcagtgattgctgagatagatgggagagtagagtttggtaaagat
tataagtctaagagacgtattattatacatccagttgacggttcaatgggtcttgagtat
atggtgccaaaaggtaagtatgttgtggttaatgagggagactttgttaagaaaggtgac
ttattaattgatggtaatccagtacttcaggatattttaaaagtgatgggtgtagagctt
cttgcaagctatattgttaaagaggttcaggctgtttatcgtctacaaggggtaaaaatt
gatgataagcacatagaagtaattattcgtcagatgttacagaaagtagaaataacagac
tcaggcggtactacattattagtaggtgagaagatagatcgacgtgaatttgacgaagta
aatgaaaaagcaattaagaatggtttaagacctgctgatgctcagttaatattacaaggt
attactaaatcttctctgcaaactagatcatttatatctgctgcatcattccaagaaact
actagggttttaactgaagctgctattgctggtaaggttgataagctacgaggactgaaa
gagaatgttatagttgggcgtttagtacctgcaggaacaggtttctttatggataaaatg
cataaagtagcagcaaaacttgacgaagaaaatgcttaa

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