Roseovarius indicus: RIdsm_00008
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Entry
RIdsm_00008 CDS
T06222
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
rid
Roseovarius indicus
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rid03032
]
RIdsm_00008 (gyrB)
03400 DNA repair and recombination proteins [BR:
rid03400
]
RIdsm_00008 (gyrB)
Enzymes [BR:
rid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RIdsm_00008 (gyrB)
DNA replication proteins [BR:
rid03032
]
Prokaryotic type
DNA Topoisomerases
RIdsm_00008 (gyrB)
DNA repair and recombination proteins [BR:
rid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RIdsm_00008 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
HATPase_c
Toprim
GyrB_hook
GyrB_insert
Toprim_4
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
QEW24236
UniProt:
A0A0T5P6P0
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Position
6892..9309
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AA seq
805 aa
AA seq
DB search
MAEAVPAREEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG
HADVVTVTIHGDSSVSVSDNGRGIPVEMHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG
LHGVGVSVVNALSDWLELRIWRSGKEHVARFEGGETVEHLKVVADADGKRGTEVRFLAST
DTFSNLEYNFETLEKRLRELAFLNSGVRIRLRDERPEEALESELHYEGGVKEFVKYLDRH
KAPMLPEPIFITGERDDIQVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFRGALTRV
MQKYAAESGIAKKEKVTFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL
MNEKLSEWFEENPNEARQIVGKIMEAALAREAARKARELTRRKNPMDMNFLSSKLKDCSD
KNPANTEIFLVEGDSAGGSAQTGRDRATQAILPLKGKILNVERARFDRMLGSQEIGNMVM
ALGTGIGRDEFDISKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIAQP
PLYKVSRGKSEVYLKDEAAMQDYLIQQGTEDAVLRLGSGEEIVGQDLVRVVEEARQTKRI
LDAFPTHYPRNILEQAAIAEAFLPGRADADLQGVADAVAKRLDLIAVEYERGWQGRPTQD
HGIRLTRMVRGVEEVRTLDGPVLRSGEAKRLAQLTQSLREVYTRPASLHRKDRFQAIYGP
LDLLDAILKEGEKGLALQRYKGLGEMNPNQLWETTLDPEARTLLQVKIDDVAEADDLFTK
LMGDVVEPRREFIQQNALSVENLDF
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagcagtaccggcgcgcgaagaatacggcgccgattccatcaaggttctcaag
gggttggaggccgtgcgcaaacggcctggcatgtatatcggtgataccgacgatggctcg
ggtctgcatcacatggtgtacgaggtcgtcgataacgggatcgacgaggcgctggcgggc
catgcggacgttgtgacggtcacgattcacggcgattcaagcgtttcggttagcgataac
ggccgcgggattccggtggagatgcacgaggaagagggcgtttcggcggccgaggtcatc
atgacccagctgcatgccgggggtaagttcgacagcaactcgtacaaggtgtcgggcggt
ctgcacggggtcggtgtttcggtggtgaacgcgctgtccgactggctggagctgcggatc
tggcggagcggcaaggagcatgtcgcgcgcttcgagggcggcgagacggtcgagcacctg
aaggtggtggccgatgccgatggcaagcgcggcaccgaggtgcggtttttggcgtcgacc
gacacgttctcgaacctcgagtacaatttcgagacgctggagaagcggctgcgcgagctg
gcgtttctgaattccggcgtgcgcatccggctgcgcgacgagcggccggaagaggcgctg
gagtcggagctgcattacgagggcggggtcaaggagttcgtcaagtatctcgaccggcac
aaggcgccgatgctgcccgagccgatcttcatcaccggggagcgggacgatatccaggtg
gaagtggcgatgtggtggaacgacagctatcacgagacggtgctgccctttaccaacaac
attccgcaacgggatggcgggacgcaccttgccgggttccggggcgcgctgacgcgggtg
atgcagaaatacgccgccgaaagcgggatcgccaagaaggagaaggtgacgttcactggg
gacgatgcgcgcgaggggctgacctgtgtgctgtcggtgaaggtgccggacccgaagttt
tcgagccagacgaaagacaagctggtgagttcggaggtgcggccggcggtcgaggggctg
atgaacgagaagctgtcggagtggttcgaggagaaccccaacgaggcacggcagatcgtc
ggcaagatcatggaagccgctctggcgcgggaggcggcaaggaaggcgcgcgagctgacc
cggcggaagaacccgatggacatgaacttcctcagcagcaagctgaaggattgttcggac
aagaacccggccaacaccgagatcttcctggtggagggtgacagcgccggcgggtcggcc
cagaccgggcgggaccgggccacgcaggccatcctgccgctgaagggcaagatcctgaac
gtggaacgggcgcggttcgaccggatgctgggcagccaggagatcggcaacatggtgatg
gcgctcggcaccgggatcgggcgggacgagttcgacatctcgaagctgcgctatcacaag
atcatcatcatgacggatgccgacgttgatggcgcgcatatccggacgctgttgctgacc
ttcttctaccggcagatgccggagctgatcgagggcgggtatctctatattgcgcagccg
ccgctctacaaggtgtcgcggggcaagtcggaggtctacctcaaggacgaggcggcgatg
caggattacctgatccagcaggggaccgaggacgcggtgctgcggcttggttcgggcgag
gagatcgtcggacaggatcttgtccgcgtggtcgaggaggcgcggcagaccaagcggatt
ctcgatgccttcccgacgcattacccccgcaacatccttgagcaggcggcgattgccgag
gcgttcctgccggggcgggccgatgcggatttgcagggcgtggccgatgcggtggcgaag
cggcttgacctcattgcggtggaatacgagcgcggctggcagggccggccgacgcaggat
cacggtatccgcctgacccgcatggtgcgcggggtcgaggaggtgcgcacgctggatggc
ccggtgctgcggtcgggtgaggcgaagcgtctggcgcagctgacgcagtcgctgcgggag
gtgtatacccggccggcgtccctgcaccgcaaggaccggttccaggcgatctatggcccg
ctggacctgctggatgcgatcctgaaggaaggcgagaaggggctggcgttgcagcggtac
aaggggctgggcgagatgaacccgaaccagctttgggaaaccacgctggaccccgaggcg
cggacgctgttgcaggtcaagatcgacgacgtggccgaggcggacgacctgttcaccaag
ctgatgggcgacgtggtggagccgcggcgcgagttcatccagcagaacgcgctgagcgtc
gagaacctcgacttctag
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