Roseovarius indicus: RIdsm_00474
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Entry
RIdsm_00474 CDS
T06222
Name
(GenBank) uracil-DNA glycosylase, family 4
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rid
Roseovarius indicus
Pathway
rid03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RIdsm_00474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rid03400
]
RIdsm_00474
Enzymes [BR:
rid01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
RIdsm_00474
DNA repair and recombination proteins [BR:
rid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RIdsm_00474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Fas1-AflB-like_hel
Motif
Other DBs
NCBI-ProteinID:
QEW24691
UniProt:
A0A5P3A6L6
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All DBs
Position
complement(482250..483074)
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AA seq
274 aa
AA seq
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MRYAAPVESELSYHAARALLEWHIELGATEAIGDLPVNRYEIPAAALAPKPAPTPDAAAA
RATPPLPQAAPEVDPVDVARAAAAGAADLKALEAAMADYPHCDLKMGARNLVFFDGNPAA
RVMIIGEAPGRDEDMQGKPFVGRAGQLLDRMLAAIGMARHSQDPAKSVYITNVLPWRPPQ
NRDPKPEEIAMLLPFLQRHVELVDPELVVLMGNTSCQAGLGRRGITRLRGTWTQAYGRPA
MPMFHPAGLLRNPHNKRFAWADLLEVQARLEGET
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
ttgcgatacgctgcgcccgtggaatcggagctttcatatcacgccgcccgcgccctgctg
gaatggcatatcgaactcggcgcgaccgaggcgatcggcgatctgccggtcaaccgctat
gaaatccccgctgcggcgctggcgcccaagcctgcgcccacaccggacgccgcggcggcg
cgcgccacgccgccgttgccgcaagccgcgcccgaggtcgacccggtcgacgtggcccgc
gccgccgccgccggtgccgccgacctcaaggcgctcgaagccgcgatggccgattatccc
cattgcgacctcaagatgggcgcccgaaacctcgtcttcttcgacggcaaccccgccgcc
cgcgtgatgatcatcggcgaggcgcccgggcgcgacgaggacatgcagggcaagcccttc
gtcgggcgtgcggggcagttgttggaccggatgctggcggcgatcggcatggcccgccat
tcgcaagatccggccaagtcagtttatatcaccaacgtcctgccgtggcgcccgccgcag
aaccgcgacccgaaaccggaagagatcgccatgctgctgcccttcctgcagcgccatgtc
gaactggtcgatccggagctggtcgtgctgatgggcaatacaagctgtcaggcggggctg
ggccggcggggtatcacccggctgcgcggcacctggacgcaagcctatggccgccccgcc
atgccgatgttccacccggcgggtcttttgcgcaatccgcacaacaagcgctttgcctgg
gccgatctgctggaagtgcaagcgcggctcgagggagagacatga
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