Roseovarius indicus: RIdsm_01090
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Entry
RIdsm_01090 CDS
T06222
Symbol
cdhR_2
Name
(GenBank) Carnitine catabolism transcriptional activator
KO
K17736
AraC family transcriptional regulator, carnitine catabolism transcriptional activator
Organism
rid
Roseovarius indicus
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rid03000
]
RIdsm_01090 (cdhR_2)
Transcription factors [BR:
rid03000
]
Prokaryotic type
Helix-turn-helix
AraC family
RIdsm_01090 (cdhR_2)
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Gene cluster
GFIT
Motif
Pfam:
HTH_18
DJ-1_PfpI
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
QEW25304
UniProt:
A0A5P3A928
LinkDB
All DBs
Position
1152870..1153913
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AA seq
347 aa
AA seq
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MGQMHRSFRNSHISVDKASRHIAFLLLPGFSHYSFSAALEPLRSANIITGRQHFTWTLVG
TTDRQVTASNGVTTLADLTLDELDTPDEVVLFAATNADPVTTAPAEKWLRFHYRQGGNIR
AVSSGVMVLARTGLLDNRRCAAHWEDTPRLRETFPRLTVTDSIFEPGDRISTCAGGAASA
HMMLAMLEHSLGPALALDVATRMVIDRIRDGRDSLDVLPHIRYGTSNRLLLQAIALMNDN
ISEPLRIREMAAKVGASVRALERQFKSELGATPDRFYRRIRLSRARQLLRYSDHSLVEVA
AYCGFGNTQLLKKHYETVYGTSPRAERQRSRSAHGPAPILHEVNADY
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgggacagatgcacagatccttcaggaattcccacatttctgtggacaaggcatcgcgt
cacatcgcctttctgctccttcccggcttttcgcattactctttctccgccgcgctggaa
ccgctgcgcagcgccaacatcatcactgggcgccagcacttcacctggaccctcgtcggc
accaccgaccgtcaggtcacggcctccaacggcgtcaccacgctcgccgacctcaccctc
gacgaactcgatacccccgacgaagtcgtgctcttcgccgccaccaatgccgaccccgta
accaccgcccccgccgagaaatggctccgcttccactaccgtcagggcggcaacattcgc
gccgtctcctccggcgtcatggtcctcgcccgcaccggcctgctcgacaaccgtcgctgc
gccgcacactgggaagacacgcctcgactgcgcgaaaccttcccgcgcctcaccgtcacc
gacagcatcttcgaaccgggcgatcgcatctccacctgcgccggcggcgcggccagcgcc
cacatgatgctcgccatgctcgagcactccctcggccccgccctcgcgctcgacgttgcc
acccgcatggtcatcgaccgcatccgcgacggccgcgacagcctcgacgtgctcccgcat
atccgctacggcacctccaaccggcttctccttcaggccatcgcgctgatgaacgacaac
atctccgaacccctgcgcatccgcgaaatggccgccaaggtcggtgccagcgtccgcgcc
ctcgaacgccagttcaaatccgagctcggcgccacccccgacaggttctaccgccgcatc
cgcctctcccgcgcccgccagcttttacgctacagcgatcacagccttgtcgaggtcgcg
gcctattgcgggttcggcaacacccagcttctgaagaagcattacgaaaccgtctacgga
acctccccccgcgccgagcggcaacgcagccggtccgcccacggtccggccccgatcctg
catgaagtcaatgccgattactga
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