Roseovarius indicus: RIdsm_01200
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Entry
RIdsm_01200 CDS
T06222
Symbol
fadB_4
Name
(GenBank) Fatty acid oxidation complex subunit alpha
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
rid
Roseovarius indicus
Pathway
rid00071
Fatty acid degradation
rid00280
Valine, leucine and isoleucine degradation
rid00310
Lysine degradation
rid00362
Benzoate degradation
rid00380
Tryptophan metabolism
rid00410
beta-Alanine metabolism
rid00640
Propanoate metabolism
rid00650
Butanoate metabolism
rid00907
Pinene, camphor and geraniol degradation
rid00930
Caprolactam degradation
rid01100
Metabolic pathways
rid01110
Biosynthesis of secondary metabolites
rid01120
Microbial metabolism in diverse environments
rid01200
Carbon metabolism
rid01212
Fatty acid metabolism
Module
rid_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
RIdsm_01200 (fadB_4)
00650 Butanoate metabolism
RIdsm_01200 (fadB_4)
09103 Lipid metabolism
00071 Fatty acid degradation
RIdsm_01200 (fadB_4)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
RIdsm_01200 (fadB_4)
00310 Lysine degradation
RIdsm_01200 (fadB_4)
00380 Tryptophan metabolism
RIdsm_01200 (fadB_4)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
RIdsm_01200 (fadB_4)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
RIdsm_01200 (fadB_4)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
RIdsm_01200 (fadB_4)
00930 Caprolactam degradation
RIdsm_01200 (fadB_4)
Enzymes [BR:
rid01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
RIdsm_01200 (fadB_4)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
RIdsm_01200 (fadB_4)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
RIdsm_01200 (fadB_4)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
RIdsm_01200 (fadB_4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
NAD_Gly3P_dh_N
ApbA
Motif
Other DBs
NCBI-ProteinID:
QEW25414
UniProt:
A0A0T5PBS0
LinkDB
All DBs
Position
1272638..1274782
Genome browser
AA seq
714 aa
AA seq
DB search
MLDDAETVFDGKTMRLTRGAGGIARLVIETPGPLNTLSAAVHADLARVVETVENDAQITG
LLVTSERDDFVVGADIGEFAELFAMDEPAIATRCRDMNAGFAALEDLRVPTVAAMPGMSL
GGGLELAMCCDARVLADTGRVGLPEVTLGVFPGLGGTVRAPRLAGCALALDMIVSGKPID
AEKARKSGLVTETAAPAALGEAAGRLLADLIASGDWRAMRARKTAPAVGIDPGAIDAVRK
GDRSGPHQPAARMAIDLIERTAPQGRAEAQEAECLAFAAVAKTQAAASMTKTFFAQRAVA
KAAKTAADGAEAPAIVGVLGAGIMGGGIAYTLARNGVQVPMRDIADTALDAAGEEVDRLV
AGEIKRGKLDDAKGADLKARIAGSTSLDGTADAGLVIEAVVERLSVKRTVLAELEQTIAP
DAVIATNTSSLRIDDIGAEMIHNDRLVGMHFFNPVPRMPLVEIVRGTHSSDAAVARAVAT
ALKMRKTPIVVADCPGFLVNRILVAYINAFTKLVSEGVDFRQIDRVMEAMGWPMGPALLQ
DVVGMDTGAHVIETISAGYPDRMTHDWPDAVVAMSGAGRLGQKSGKGFYAWSRDDNGRLR
KQDDPESDALIESIRTAPPREASDTEIEERMMLALVLEAIHALEDNAVGSAAELDMALVM
GIGLPVHMGGALAWADWTGLPEIVAMCDRYENLGPAYRATEDLRRRAETGDPYR
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgttggacgacgccgaaaccgtcttcgacggaaaaaccatgcgcctgacccgcggggcc
ggcggcatcgcccgtctggtgatcgaaaccccggggccgctcaacacgctcagcgcggcg
gtccatgccgatctcgcccgcgtggtcgagacggtcgagaatgacgcgcagatcaccggc
ctcctcgtcaccagcgagcgcgacgatttcgtcgtcggcgccgatatcggcgagtttgcc
gagcttttcgcgatggacgaacccgccatcgccacccgttgccgcgatatgaacgcaggc
ttcgctgcgctcgaagacctgcgcgtgcccaccgtcgccgcgatgcccggcatgtcgctc
ggcggcgggctggaactcgccatgtgctgcgacgcccgcgtcctcgccgacaccggccgc
gtcggcctgcccgaggtcacgctcggcgtcttccccgggctgggcggcaccgtccgcgcc
ccgcgcctcgccggctgcgcgctggcgctcgacatgatcgtgtcgggcaagcccatcgac
gccgagaaggcccgcaaatccggcctcgtcactgaaaccgccgcccccgccgcgctgggc
gaagcggccgggcgcctgctggccgacctcatcgccagcggcgactggcgcgccatgcgc
gcccgcaagaccgcccccgccgtcggcatcgaccccggcgccatcgacgccgtccgcaag
ggcgaccgctcgggcccgcaccagcccgccgcgcgcatggccatcgacctgatcgaacgc
accgccccccagggccgcgccgaggcgcaggaggccgaatgcctggccttcgccgccgtc
gccaagacccaggcggccgcgtccatgactaagaccttcttcgcccagcgcgccgtcgcg
aaagccgccaagacggccgccgacggagccgaggcaccggcaattgtcggcgtgctcggc
gccggcatcatgggcggcggcattgcctataccctggcgcgcaacggcgtgcaggtgccg
atgcgcgatatcgccgacaccgccctcgacgccgcgggcgaggaggtcgaccgccttgtc
gctggcgaaatcaagcgcggcaaactcgacgacgccaaaggcgccgacctcaaggcccgc
atcgccggcagcaccagcctcgacggcactgccgacgccggcctcgtgattgaggccgtg
gtcgaacggctctcggtcaagcgcaccgtcctcgccgagctggaacagacgatcgccccc
gacgcggtcatcgccaccaacacctcgagcttgcgaattgacgatatcggcgcagaaatg
atccacaatgatcggctggtcggcatgcacttcttcaatcctgtccccagaatgcccctt
gtcgagatcgtgcgcggcacccatagctccgacgccgccgtggcccgcgccgtggcgacc
gcgctcaagatgcgcaagacgcccatcgtcgtcgccgactgccccggcttcctcgtgaac
cgcatcttggtcgcttacatcaacgccttcacaaagctggtgtccgagggtgtcgacttc
cgccagatcgaccgcgtgatggaggcgatgggctggccgatgggccccgcgctcctgcag
gatgtcgtcggcatggataccggcgcccacgtgatcgagaccatctccgccggctacccc
gaccgcatgacccacgactggcccgatgccgtcgtcgccatgtccggggccggccgcctc
gggcagaaatccggcaagggcttctacgcctggtcgcgcgacgacaacggccgcctgcgc
aagcaggacgaccccgagtccgacgcgctgatcgaaagcatccgcaccgccccgccgcgc
gaggccagcgataccgagatcgaggagcgcatgatgctggccctcgtgctcgaagctatc
cacgcgctggaagacaacgccgtcggctccgcggccgagctcgacatggcgctcgtcatg
ggtatcggcctgccggtgcacatgggcggcgcgctggcctgggccgactggacaggcctg
ccagagatcgtggcaatgtgcgaccggtacgaaaacctcgggccggcctaccgggcaacg
gaagacctccggcgccgggccgaaacgggcgacccctatcgctga
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