Roseovarius indicus: RIdsm_01706
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Entry
RIdsm_01706 CDS
T06222
Symbol
cdhR_4
Name
(GenBank) Carnitine catabolism transcriptional activator
KO
K21826
AraC family transcriptional regulator, glycine betaine-responsive activator
Organism
rid
Roseovarius indicus
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rid03000
]
RIdsm_01706 (cdhR_4)
Transcription factors [BR:
rid03000
]
Prokaryotic type
Helix-turn-helix
AraC family
RIdsm_01706 (cdhR_4)
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GFIT
Motif
Pfam:
HTH_18
HTH_AraC
DJ-1_PfpI
Motif
Other DBs
NCBI-ProteinID:
QEW25914
UniProt:
A0A0T5PDM5
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Position
complement(1838815..1839837)
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AA seq
340 aa
AA seq
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MQDRSFVPRGAASLSVVYDGPPRDYHFLLLPKLTLLAFTSALEPLRVANQVTGKELYRWY
VMTEDDASVTCSCGVTITPDTALRDVPRDGAAFVCGGIEPNESTSRRAVGWITRQRAFGA
RVGGICTGAFALARAGLLDGRRFTLHWENQPAFVETFLDLEPTENLYENDDGLLTCGGGS
AATDMMLAIIEADFGSELATIVADMCLHSRSENRAVPQRSAYASAIGSRNPRLIAAVEYM
KAHLEDPVEMRDVAGHIGLSKRQMERLFQRYIRATPAQFYLDLRVTRAHALLNETNMTVA
EVAAATGFTSSTQLSQRFRKRYGKSPSVYRKGWTQPVAGG
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaccggtctttcgttccccgcggtgcggccagcctttcggtggtctatgacggg
ccgccgcgggattatcatttcctgttgctgccgaagctgacgcttctggccttcacctcg
gcgctggagccgttgcgggtggccaaccaggtgaccggcaaggagctctaccgctggtac
gtgatgacggaggacgatgcctcggtcacctgttcctgcggggtcaccatcacgccggat
acggccctgcgcgatgtgccgcgggacggggcggcgtttgtctgtggcgggatcgagccg
aacgagagcacctcgcggcgggcggtggggtggatcacgaggcagcgggccttcggggcg
cgggtgggcggcatctgcaccggggcgtttgcgctggcgcgggccgggctgctcgacggg
cggcggtttaccctgcactgggagaaccagccggccttcgtcgagacgttcctggacctg
gagccgaccgagaacctttacgagaacgacgacggattgctgacctgtggcggggggagt
gcggcgacggacatgatgctggcgatcatcgaggcggatttcggcagtgagctggcgacg
atcgtggcggacatgtgcctgcacagccgatcggagaaccgggcggtgccgcagcggtcg
gcctatgcctcggccatcgggagccggaacccgcggctcattgcggcggtggagtacatg
aaggcgcatctggaggacccggtcgagatgcgggacgtggcggggcatatcgggctgtcg
aagcggcagatggagcggctgttccagcggtatatccgggcgacgccggcgcagttctac
ctcgacctgcgggtgacccgggcgcatgcgctgctgaacgagaccaacatgacggtggcg
gaggtggcggcggcaacggggttcaccagttccacgcagctctcgcagcggttccggaag
cggtacgggaagagcccgagcgtgtaccggaaggggtggacgcagccggtcgccggaggc
tga
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