Roseovarius indicus: RIdsm_02709
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Entry
RIdsm_02709 CDS
T06222
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rid
Roseovarius indicus
Pathway
rid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RIdsm_02709 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rid03019
]
RIdsm_02709 (rne)
03009 Ribosome biogenesis [BR:
rid03009
]
RIdsm_02709 (rne)
Enzymes [BR:
rid01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RIdsm_02709 (rne)
Messenger RNA biogenesis [BR:
rid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RIdsm_02709 (rne)
Ribosome biogenesis [BR:
rid03009
]
Prokaryotic type
rRNA processing factors
RIdsm_02709 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QEW26903
UniProt:
A0A0T5PAS5
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All DBs
Position
complement(2835651..2838533)
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AA seq
960 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALLEEERAYAEQQRAREDDDEKPKKSSRRSSSR
SKAAKAKSDDAVTSSEDISGMETIELDEAAEDSGDGEGLSPMETVAETPVEEPADDAGAQ
DAKDAGAATSEDQTAEGDSASSDDNGHDDHGHEDHGHDEHSHENNGNGSGKGRSSSKRSD
AAAKDDTIESVADDDDTDDIRAPRKPRPRRYKIQEVIKVRQILLVQVVKEERGNKGAALT
TYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKEIATEIDVPTGAGLIIRTAGAKRT
KSEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGNLIKRSIRDLYNREIDEVMVEGEAG
YRVAKDFMKMIMPSHAKNVKHYIDPMPLFARYQVESYLSSMFNPTVQLKSGGYIVIGVTE
ALVAIDVNSGRATKEGSIEETATKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNN
AVEKKLKDKLKSDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQACPACHGTGLIRSDD
NLALSILRQIEEEGVRRRSREVLVKCPVGIANFLMNQKREHVAQIEGRYGLSVRIEGDPV
LISPDFSIDKFKTATRHVPEAAPVVSVDSSLMEEVEAEIPDEEETSSDASSDETTTSGGG
DDDGKPKKRRRRRRRRSKSRSGNGEGSANGEGQNNEDGSSESGTGSEDGAKPEADAEADA
EKASESKPDEAVTAEVSGEDTEKAEKPKRTRKPRSSSKSKAKAEETSEDTAEAKTEEPAA
EAPAEEAKPEAVEIAAEEKPAKPAPKRASRSRSKKAEPAPEPETETAPKPEAVAESAAAT
AEEPAPAPEPEQAAEPAPAPAEPESAPEPKREPEPANASAEPAEEESDKPKRRGWWSIGR
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctcatcgatgccacccacgcggaagagacccgcgtcgtggtggtc
gacggaaacaaggtcgaggaatttgactttgagtccgaaaacaaacggcagctcgccggc
aacatctatctcgcaaaggtaacacgggtcgagccgtcacttcaggcggccttcgtggat
tatggcggaaaccggcacggtttccttgccttttcggaaatccacccggactactaccag
atccccgtggccgaccgcgaggcgctgctcgaggaagagcgcgcctatgccgaacagcag
cgcgcccgcgaggatgacgacgagaagccgaagaaatcttcgcgccggtcgtcgtcgcgc
tcgaaagccgcgaaggcgaaatccgacgatgcggtgacctcctccgaggatatctcgggg
atggagacgatcgaactggatgaagcggccgaggacagcggcgacggcgaaggcctgtcg
ccgatggaaaccgtggccgaaactccggtcgaggaaccggcggacgatgccggtgcgcag
gacgcgaaggacgccggcgccgcaacgtcggaggatcagaccgccgagggcgatagcgca
tccagcgatgacaatggtcacgacgatcacggtcacgaggatcacggacacgacgaacat
tcccacgagaacaacggcaacgggtccggcaagggccggtcgtcgtcgaagcggtcggac
gccgccgccaaggacgacacgatcgagtcggtcgccgatgacgacgacaccgacgacatc
cgcgcgccgcgcaagccccggccgcgccgctacaagatccaggaagtcatcaaggtccgt
cagatcctgctggtgcaggtcgtcaaggaagagcgcggcaacaagggtgccgcgctgacc
acctacctgtcgctcgccggccgctactgcgtgctgatgcccaacaccgcccgtggcggc
ggcatctcgcgcaagatcaccaacgccgccgaccgcaagaagctgaaagagatcgcaacc
gagatcgacgtgccgaccggcgcaggcctgatcatccgcaccgcgggcgccaagcgcacc
aagtcggagatcaagcgcgactatgaatacctgcaacgcctgtgggagcagatccgcgaa
ctgacgctgaaatccatcgcgccggcgaagatctacgaggaaggcaacctgatcaaacgc
tcgatccgcgacctctataaccgtgagatcgacgaggtgatggtcgagggcgaggcgggg
tatcgcgtggccaaggacttcatgaagatgatcatgccgtcccacgccaagaacgtgaaa
cattacatcgacccgatgccgctgttcgcccgctaccaggtggaaagctacctcagctcg
atgttcaacccgaccgtccagctcaagtcgggcggctacatcgtgatcggcgtgaccgag
gcgcttgtggcgatcgacgtgaactcgggccgggccaccaaggaaggctcgatcgaggag
accgcgaccaagaccaacctcgaggccgccgaggaggtggcccgccagctgcgcctgcgc
gatctggccggtctgatcgtgatcgacttcatcgacatggacgagcgcaagaacaacaac
gccgtcgagaagaagctgaaggataagctgaaatccgaccgcgcgcgcatccaggtgggt
cgcatctcgggtttcggcctgctggagatgagccgccagcgcctgcgccccggcatgatc
gaggcgacgacgcaggcctgtccggcctgtcacggcacggggctcatccggtcggatgac
aaccttgccctgtcgatcctgcgccagatcgaggaggaaggcgtgcgccgccggtcgcgc
gaagtgctggtgaaatgcccggtgggtatcgccaacttcctgatgaaccagaagcgcgag
cacgtcgcccagatcgaggggcgctatggcctgtctgtccggatcgagggcgacccggtt
ctgatcagccctgatttcagcatcgacaagttcaagaccgccacccgccacgtgccggag
gccgcaccggttgtgtcggtcgacagctcgctgatggaggaggtcgaggcagagatcccg
gacgaggaagaaacgtcttcggacgcgtcgtcggatgagaccaccacctccggcggggga
gatgatgacggcaagccgaagaagcgccggcgtcgtcggcgtcgccggtcgaaatcgcgt
tcggggaacggcgagggctcggccaatggcgagggccagaacaacgaggacgggtcgtcg
gagagcgggactggctcggaagacggggccaaacccgaggccgatgccgaggcggatgca
gaaaaggcaagcgagagcaagccggacgaggccgtgaccgcagaggtctcgggcgaggac
accgaaaaggccgaaaagcccaagcggacccgcaagccgcgcagctcttcgaagtcgaag
gcgaaggccgaagaaacatcagaggacaccgcagaggccaagacggaagagcccgctgcc
gaagcgcctgctgaagaggccaagccggaagcggtagagatcgctgccgaggaaaagcct
gcgaagcctgccccgaaacgggcgagccggtcgcgctccaagaaggcagagccggcgccc
gaaccggaaaccgagacggcacctaagcccgaggctgttgcagagagcgcagcagcgacg
gcggaggagcccgcgccggcaccggaaccggaacaggcggcagaacccgcgccggccccg
gcagagcccgagagtgcgcccgagccgaaacgcgagccggaaccggccaacgcatcggcc
gagccggccgaggaagaaagcgacaagcccaagcgccgcggttggtggtcgatcgggcga
taa
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