Roseovarius indicus: RIdsm_02724
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Entry
RIdsm_02724 CDS
T06222
Symbol
rnd_1
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rid
Roseovarius indicus
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rid03016
]
RIdsm_02724 (rnd_1)
Enzymes [BR:
rid01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RIdsm_02724 (rnd_1)
Transfer RNA biogenesis [BR:
rid03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RIdsm_02724 (rnd_1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QEW26918
UniProt:
A0A5P3AF43
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All DBs
Position
complement(2851010..2852194)
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AA seq
394 aa
AA seq
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MANEKTLSRITTITTTEDLAAFCARAAECDYVTVDTEFLRERSYYSKLCLVQLALPTRGP
DDAVLVDPIAGDLSLEPLYELFRDTSVVKVFHAARQDLEIFHVDAGLIPEPLFDTQVAAM
VCGFGEQVGYETLVRRIARQSLDKTSRFTDWSRRPLTDAQRTYAVADVTHLRDIYEYLAA
KLAETGREKWVAEEMEILKDPETYIIRPEDAWKRVKTRNASGRFLAIVRELARFREDYAQ
TRNVPRSRVFKDDALVELASTKPGSLNDLSRSRLLLREARKGDIADGILAAVKDGLDTPN
DEVPKPDRSREKLQVNPALADLLRVLLKAKTEEFGVASKLIASAADLDAISGGERDVPAL
KGWRNEVFGRDAMRLCEGKVALAAKGKSIVTVDL
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacgaaaaaaccctttcgcggatcacgaccatcaccacgaccgaagatctcgcg
gcgttctgcgcccgcgcggccgagtgcgattacgtgaccgtcgataccgagttcctgcgc
gagcgcagctactattccaaactgtgcctcgtccagctggcactccccacgcgcgggccg
gacgatgccgttctggtcgacccgattgccggcgacctctcgctcgagccgctgtatgaa
ctgttccgcgacacgtcggtggtcaaggtcttccatgccgcgcggcaggacctggaaatc
ttccatgtcgatgccgggctgatccccgaaccgctcttcgacacgcaggtcgcggccatg
gtctgcggcttcggcgagcaggtgggctatgagaccctcgtgcgccggatcgcccggcag
tcgctcgacaagacctcgcgcttcaccgactggtcgcgccgcccgctgaccgacgcccag
cgcacctatgccgtggccgacgtgacgcacctgcgagacatctacgaatacctcgccgcc
aagctggccgagacgggccgcgagaaatgggtcgccgaggagatggagatcctcaaggat
cccgaaacctacatcatccgccccgaggatgcgtggaaacgggtgaagacccgcaacgcc
tcgggccggtttctggccatcgtgcgcgaactggcccggttccgcgaggattacgcccag
acccgcaacgtgccgcgcagccgtgtcttcaaggacgatgcgctggtcgagctggcctcg
accaagccgggctcgctgaacgacctgtcgcgctcgcgactcctgctgcgcgaggcccgc
aagggcgatatcgccgacggcatcctcgcggcggtgaaagacgggctcgacacgcccaat
gacgaggtgcccaagcccgaccgctcgcgcgagaagctgcaggtgaacccggcgctggcc
gatttgctgcgcgtgctgctcaaggccaagaccgaggaattcggcgtcgcctcgaaactg
atcgccagtgccgcggatctcgatgccatctcgggcggcgagcgggacgtgcccgcgctc
aagggctggcgaaacgaggtcttcggccgcgacgcgatgcgcctgtgcgaaggcaaggtg
gcgctggccgccaagggcaagtcgatcgtgacggtcgacctctaa
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