Roseovarius indicus: RIdsm_02848
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Entry
RIdsm_02848 CDS
T06222
Symbol
cdhR_5
Name
(GenBank) Carnitine catabolism transcriptional activator
KO
K21826
AraC family transcriptional regulator, glycine betaine-responsive activator
Organism
rid
Roseovarius indicus
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rid03000
]
RIdsm_02848 (cdhR_5)
Transcription factors [BR:
rid03000
]
Prokaryotic type
Helix-turn-helix
AraC family
RIdsm_02848 (cdhR_5)
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Gene cluster
GFIT
Motif
Pfam:
HTH_18
HTH_AraC
DJ-1_PfpI
DUF7454
Motif
Other DBs
NCBI-ProteinID:
QEW27039
UniProt:
A0A0T5PAR4
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All DBs
Position
2973053..2974054
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AA seq
333 aa
AA seq
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MQVETGKVEVKAQGAPRRFVFVLLENFSLLSFAAALDCLRIANRMADKTLYTWVTTGESG
DTVGCSAGTRFHLDMPLEELSRDDTMLICGGTDIQQATTKKLLNWLRREARRGLRVGGLC
TASYVMARAGLLDGKKATIHWENHDSFTEEFDEVELTKSVFVIDGSRMSTAGGTSSIDLM
LKIIADEQGDKLANAVADQMIYASIRTDQDTQRLSVPTRIGVRHPKLSQVIQMMEANIEE
PISPAILAKDVGMSTRQLERLFRRYLNRSPKRYYMELRLQKARNLLMQTDMTVINVALAC
GFASPSHFSKCYRSHYNTTPYRERGSQSTRLSV
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcaggttgagactggcaaagtcgaggtgaaggcgcagggcgcacccagacgtttcgtt
ttcgttcttctcgaaaacttctccctgctcagctttgccgcggccctcgattgcctgcgg
atcgcgaaccgtatggccgacaaaaccctgtatacatgggtgaccaccggcgaatccggc
gacaccgtcggctgttccgccggcacgcggttccatctcgacatgcctctcgaagagctc
agccgtgacgacacgatgctgatctgcggcggcaccgatatccagcaggcgaccaccaag
aagctgctgaactggctgcgccgcgaggcccgccgcggcctacgcgtgggcggtctctgc
acggcaagctacgtgatggcgcgcgccggcctgctcgatggcaagaaagcgaccatccac
tgggaaaaccatgacagcttcaccgaggaattcgacgaggtagaactgaccaagtcggtc
ttcgtgatcgacggcagccgcatgtcgaccgcggggggcacctcctccatcgacctaatg
ctcaagatcatcgccgacgaacagggcgacaagctcgccaatgccgtggccgaccagatg
atctacgcctcgatccgcaccgaccaggacacccagcgcctgtcggttcccacccgtatc
ggtgtgcgccaccccaagctcagccaggtcatccagatgatggaggccaatatcgaggaa
ccgatcagccccgccatcctcgccaaggatgtcggcatgtcgacgcgtcagctagaacgg
ctgttccggcgctacctcaaccgctcgcccaagcgctactacatggaactgcggcttcaa
aaggcccgcaacctgctgatgcagaccgacatgaccgtgatcaacgtggcgctggcctgc
gggttcgccagcccctcgcacttctccaagtgttaccgctcacactacaacaccacgcct
tatcgtgagcgcggctcccaatcgacccggctttcggtctaa
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