Roseovarius indicus: RIdsm_04120
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Entry
RIdsm_04120 CDS
T06222
Symbol
ihfB
Name
(GenBank) Integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
rid
Roseovarius indicus
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rid03032
]
RIdsm_04120 (ihfB)
03036 Chromosome and associated proteins [BR:
rid03036
]
RIdsm_04120 (ihfB)
03400 DNA repair and recombination proteins [BR:
rid03400
]
RIdsm_04120 (ihfB)
DNA replication proteins [BR:
rid03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RIdsm_04120 (ihfB)
Chromosome and associated proteins [BR:
rid03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
RIdsm_04120 (ihfB)
DNA repair and recombination proteins [BR:
rid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
RIdsm_04120 (ihfB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
QEW28291
UniProt:
A0A0T5P6X0
LinkDB
All DBs
Position
complement(4216665..4216949)
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AA seq
94 aa
AA seq
DB search
MIRSELIQKIADENPHLYQRDVERIVNTIFNEITDAMAQGNRVELRGFGAFSVKKRESRT
GRNPRTGESVHVEEKHVPFFKTGKLLRDRLNGKA
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgatccgatcggaactgattcaaaagattgccgacgagaacccgcatttgtaccagcgc
gatgttgagcgcatcgttaatacaattttcaacgaaatcaccgatgccatggcccagggc
aaccgggtcgagctgcgcggcttcggtgcgttctcggtgaagaagcgcgaatcccgcacg
gggcgcaatccgcgcaccggcgaatccgtgcatgtcgaagaaaaacacgtaccgttcttc
aagactggtaaacttttgcgcgaccgcctgaacgggaaagcctga
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