Roseovarius indicus: RIdsm_04443
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Entry
RIdsm_04443 CDS
T06222
Symbol
cdhR_8
Name
(GenBank) Carnitine catabolism transcriptional activator
KO
K17736
AraC family transcriptional regulator, carnitine catabolism transcriptional activator
Organism
rid
Roseovarius indicus
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rid03000
]
RIdsm_04443 (cdhR_8)
Transcription factors [BR:
rid03000
]
Prokaryotic type
Helix-turn-helix
AraC family
RIdsm_04443 (cdhR_8)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_18
HTH_AraC
DJ-1_PfpI
HTH_23
HTH_Tnp_ISL3
HTH_29
HTH_28
DUF4012
Motif
Other DBs
NCBI-ProteinID:
QEW28611
UniProt:
A0A0T5P2V7
LinkDB
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Position
complement(4585937..4586947)
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AA seq
336 aa
AA seq
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MPAPRTPVQLAVLVTPHFNLAATVGFIDPFRVANYLNGQILFRWDVVSEAGGDCAASNGM
VIGTRPLAEIAGQRRDIVAVSSSWTPEAHRSAQLQAALWRWARAGATMAALDTGAFILAE
AGLLKGRRATVHYEHIDAFGEMYPEIEVTEDLFVYDGNRISCSGGSAATDFALNILRGTH
GDALANRAARYLFHQSVRPPGSQQNADPLEPLGNTAPRNVRRAIALMEKHLEDPLSISEI
CERMEISHRQLDRLFRRYVKKAPAAYYRDIRLDRARGLVTQTEMALSQVALASGFASQVH
FSRAYRARFGLPPRQDRIEGRVPFEFRAWPMHRKTV
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgccccgcaccccggtgcagcttgccgttctggtgacgccgcatttcaacctt
gccgcgacggtggggttcatcgacccgtttcgcgtggcgaattacctgaacgggcagatc
ctgttccgctgggacgtggtgtcggaggcgggtggggactgcgcggcgagcaacggcatg
gtgatcgggacgcggcccttggcggagatcgcggggcaaaggcgggatatcgtggcggtg
tcgtcgagttggacgccggaggcgcatagatcggcgcagttgcaggcggccttgtggcgc
tgggccagggccggggcgacgatggcggcgctggatacgggggcgttcattcttgccgag
gcggggctgctcaaggggcggcgggcgacggtgcattacgagcatatcgatgcgttcggc
gagatgtacccggagatcgaggtgacggaagacctgttcgtttatgacggcaaccggatc
agttgcagcggtggcagtgcggcgacggatttcgcgctgaacatcctgcgggggacgcat
ggcgatgcgctggcgaaccgggcggcgcggtacctgtttcaccagagcgtgcggccgccg
gggagccagcagaatgcggacccgctggagccgctggggaacaccgcgccgcggaacgtg
cggcgggcgattgcgctgatggagaagcacctggaagacccgctgtcgatttcggagatc
tgcgagcggatggagatttcgcaccggcagttggaccggctgtttcgtcgttacgtgaag
aaggcgccggcggcgtattaccgggatatccggctggaccgggcacgggggctggtgacg
cagacggagatggcgttgagccaggtggctctggcgtcggggttcgcgagccaggtgcat
ttttcgcgggcctatcgggcgcggttcgggttgccgccaaggcaggaccggatcgagggg
cgggtgccgttcgagttccgggcgtggccgatgcatcgcaagacggtgtga
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