Roseovarius indicus: RIdsm_04860
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Entry
RIdsm_04860 CDS
T06222
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rid
Roseovarius indicus
Pathway
rid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RIdsm_04860 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rid03019
]
RIdsm_04860 (rhlE_2)
Enzymes [BR:
rid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RIdsm_04860 (rhlE_2)
Messenger RNA biogenesis [BR:
rid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RIdsm_04860 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QEW29018
UniProt:
A0A0T5PEP5
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All DBs
Position
complement(5005963..5007240)
Genome browser
AA seq
425 aa
AA seq
DB search
MQDFSEFGLSPNITAALSRAGIDKPTPIQTKAIPPALEGHDIMGLAQTGTGKTLAFGVPL
VEHLLSNPGKPLPKTVKALVLAPTRELVNQIADNLRPLTEGTKLRVFTVVGGQSINKQIA
ALGRGTDILVATPGRLIDLMDRGSVDLSQAKSLVLDEADQMLDMGFIHALRKIAPKLGTP
RHTMLFSATMPKQMEELSRAYLTNPVKVQVAPPGKAADKITQSVHFLEKTEKPGKLREIL
TASDDALTLVFARTKHGAEKLMKGLVRDGYNAASIHGNKSQGQRDRAIKAFREGDITVLV
ATDVAARGIDIPDVGYVINYDLPEVPDNYVHRIGRTARAGRDGEAIALCAPEDADLLHQI
QRLMKIEVPVASGECPTPVPGGRGPRGKGSGNARRRGQGGGNAANANGAGAAPKRNRRRR
RRKAA
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagatttttccgaattcggcctgtcgccgaacatcaccgccgcgctgtcgcgtgcc
ggtatcgacaaaccgaccccgatccagaccaaggcaattccgccggcgctggaagggcat
gacatcatggggctggcgcagaccggcaccggcaagacgctggcctttggcgtgccgctg
gtggaacatctgctgtcgaaccccggcaagccgttgccgaagacggtgaaggcgctggtt
ctggcgccgacgcgcgagctggtgaaccagatcgccgacaacctgcggcctttgaccgag
ggcaccaagctgcgggtctttaccgtggttggcgggcagtcgatcaacaagcagatcgcg
gcgctgggccgggggacggatattctggtcgccacgccgggccggctgatcgacctgatg
gatcgcggttcggtcgacctgagccaggcgaagtcgctggtgctggacgaggccgaccag
atgctcgacatgggcttcatccacgcgctcaggaagatcgcgccgaagctgggcacgccg
cgccacacgatgctgttctcggccaccatgccgaagcagatggaggagctgtcgcgcgcc
tatctgaccaatccggtcaaggtgcaggtggcgcctccgggcaaggccgccgacaagatc
acccagtcggtgcatttcctcgagaagaccgagaagccgggcaagctgcgcgagatcctg
acggcgagcgacgatgcgctgacgctggtgttcgcgcgcaccaagcacggcgccgagaag
ctgatgaaggggctggtgcgtgacgggtacaacgccgcctcgatccacggcaacaagagc
cagggccagcgggaccgcgccatcaaggcgttccgcgagggcgatatcaccgtgctggtg
gcgacggatgtcgcggcgcgggggatcgatattcccgatgtgggctatgtcatcaactat
gacctgcccgaggtgcccgacaattacgtgcaccgcatcgggcggacggcgcgggccggc
cgggatggcgaggcaatcgcgctgtgcgcgcccgaggatgccgacctgctgcaccagatc
cagcgcctgatgaagatcgaggtgccggtggccagcggcgaatgcccgacgcccgttccc
ggcgggcgcggaccgcgcggcaaggggagcggcaatgcccgccgtcgcgggcaggggggc
ggaaacgccgccaacgccaacggcgcgggcgccgcgcccaagcgcaaccggcgccgccgg
cggcgcaaggcggcctga
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