Roseovarius indicus: RIdsm_05029
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Entry
RIdsm_05029 CDS
T06222
Symbol
recQ_2
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rid
Roseovarius indicus
Pathway
rid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RIdsm_05029 (recQ_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rid03019
]
RIdsm_05029 (recQ_2)
03400 DNA repair and recombination proteins [BR:
rid03400
]
RIdsm_05029 (recQ_2)
Enzymes [BR:
rid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RIdsm_05029 (recQ_2)
Messenger RNA biogenesis [BR:
rid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RIdsm_05029 (recQ_2)
DNA repair and recombination proteins [BR:
rid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RIdsm_05029 (recQ_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
QEW29187
UniProt:
A0A0T5PE25
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All DBs
Position
5164942..5166981
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AA seq
679 aa
AA seq
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MHSAATLLHDVFGFQTFRPGQEEIVHTVAEGQNTLAIMPTGGGKSLCYQLPALLREGVTV
VISPLIALMRDQVRALRAAGVEAGALTSGNTEEETRAVWEALEEGRLKLLYIAPERLAAG
SSMGMLRRIGVSLIAVDEAHCVSQWGHDFRPDYLRIGELRRALDVPLAAFTATADAETQD
EIVQKLFDGQTPQTFLRGFDRPNIHLAFAEKDRPRQQVTAFVAARKGQSGIVYCGTRAKT
ETLARALRDDGHNACHYHGGMDAEDRRHVEHRFSTEDGLIVVATVAFGMGVDKPDIRWVV
HADLPKSIEAYYQEIGRAGRDGAPAENLTLFGADDIRLRRSQIDEGLAPPERRLADHARL
NALLGLAEALECRRTTLLGYFGEEAQGCGNCDLCDRPPETFDATEAVQKALSAALRTGEY
FGAGHLIDVLTGNETEKVRARGHDDLPTFGVGRDIDRRGWQAIFRQMMGHDLVRPDPERH
GALRITEAAHPVLRGEQAITLRRDTMQKTPRRPAAKALVSEEDAPLLSALKAKRRALAEA
AKMPAYIVFNDRTLIEMAERRPQSMDDMARISGVGAKKLEQYGAAFLEVIRGEAEAMHPT
RRKLAGREAGELYDRLLAVQADLARGETGTDKPLSCSSSLLARVASARPGTLQDMARLLG
EKRSDRFGAAFLDVLQMAD
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgcacagcgctgccacgcttctgcacgatgtcttcggattccagaccttccggccgggg
caggaagagatcgttcacaccgtcgccgagggccagaacacgctggccatcatgcccacg
gggggcggtaaatccctgtgctaccaactgcctgcgcttttgcgcgagggcgtcaccgtc
gtcatctccccccttatcgcgctgatgcgtgaccaggtgcgtgcattgcgcgccgcgggg
gtcgaggccggggcgctcacctccggcaataccgaggaggaaacccgcgccgtgtgggag
gcgctggaggaaggccgcctcaagctcctctacatcgcgcccgaacgcctcgccgccggc
tcctcgatggggatgctccgccgcatcggcgtttccctcatcgcggtcgacgaggcccac
tgcgtctcgcaatggggccacgatttccgccccgattacctccgcatcggtgaactccgc
cgcgccctcgacgtgccgctggccgccttcaccgccactgccgatgccgagacgcaggac
gagatcgttcagaagctcttcgacggccagacgccccagaccttcctgcgcggcttcgac
cggcccaacatccacctcgccttcgccgagaaggaccgaccgcgacagcaggtcaccgcc
ttcgtcgccgcccgcaaggggcagtcgggcatcgtctattgcggcacccgcgccaagacc
gaaacgctggccagggccctgcgcgacgatggacacaacgcctgccattaccacggcggg
atggacgcggaagaccgccgccatgtcgaacaccgcttcagcaccgaggacgggctcatc
gtcgtcgccaccgtcgccttcggcatgggagtcgacaaacccgatatccgctgggtcgtc
catgccgatctgcccaaatccatcgaagcctattaccaggaaatcggccgcgccggccgc
gatggcgcgccggccgaaaacctcacgctgttcggcgctgacgacatccgtctccgccga
agccagatcgacgaaggcctcgccccgcccgaacgccgcctcgccgaccacgcccgcctc
aacgcgctgcttggtctggcagaggcgctggaatgccgccgcaccaccctgcttggctat
ttcggcgaagaggcacaaggctgcggcaattgcgacctctgcgaccgcccgcccgaaacc
ttcgacgccaccgaagccgtgcaaaaggctctctccgccgcgctgcgcaccggggaatat
ttcggcgccggccacctgatcgacgtgctgacggggaacgaaaccgaaaaggttcgcgcc
cgcggccatgacgacctgcccaccttcggcgtcggccgcgatatcgaccgccgcggctgg
caggcgatcttccggcagatgatgggccacgacctcgtgcgccccgaccccgaacgccac
ggcgcgctgcgcatcaccgaggccgcgcaccccgtcctgcgcggcgaacaggccatcacc
ctccgccgcgacacgatgcagaagaccccccgccgccccgccgccaaggcgctggtgtcc
gaggaggatgcgccgctgctgtccgccctcaaggccaagcgccgcgcactggccgaggcg
gcgaaaatgcccgcctatatcgtcttcaacgaccgcacgctcatcgagatggccgaacgc
cgcccgcagagcatggacgacatggcccgcatcagcggcgtcggcgccaagaagctcgaa
caatacggcgccgcctttctcgaggtgatccggggcgaggccgaggccatgcacccgacc
cgccgcaaactcgccgggcgcgaggcgggcgagctttacgaccgccttctcgccgtgcag
gccgatctggcccgtggcgaaaccggcaccgacaagccgctcagctgctcctcctcgctt
ctggcacgcgtcgcctcggcccggcccggcacgttgcaggacatggcccgcctgctgggc
gagaaacgatccgaccgtttcggcgcggcgtttctggacgttctgcaaatggcggactaa
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