Rhizophagus irregularis: OCT59_000667
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Entry
OCT59_000667 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
rie Rhizophagus irregularis
Pathway
rie03008
Ribosome biogenesis in eukaryotes
rie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
OCT59_000667
09123 Folding, sorting and degradation
03018 RNA degradation
OCT59_000667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rie03021
]
OCT59_000667
03019 Messenger RNA biogenesis [BR:
rie03019
]
OCT59_000667
03009 Ribosome biogenesis [BR:
rie03009
]
OCT59_000667
03016 Transfer RNA biogenesis [BR:
rie03016
]
OCT59_000667
Transcription machinery [BR:
rie03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
OCT59_000667
Messenger RNA biogenesis [BR:
rie03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
OCT59_000667
Ribosome biogenesis [BR:
rie03009
]
Eukaryotic type
Pre-60S particles
RNases
OCT59_000667
Transfer RNA biogenesis [BR:
rie03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
OCT59_000667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
Motif
Other DBs
NCBI-GeneID:
90968729
NCBI-ProteinID:
XP_065988445
LinkDB
All DBs
Position
1:complement(3212350..>3214887)
Genome browser
AA seq
589 aa
AA seq
DB search
MGGYLTNSGNVDLKGLQYLVTELGKQEDDIFIRRHRNEQRRAPPPPPPKRQKTKPNKVTD
VNQPPESSQNEIDNLQNLNNECVTPSLPHLPIGMPLLPVKGFDSQLRAKSNQEVVTNRQE
LRIANINAAQSLKAELNSSSAPVSTANIDIQINKNVDSDISVSETIKRDTGDKVMLATKR
KADILDDEIPITSERDDDVNDDDDDSPSVSKDSEDVVDPIRLWETGFKERYYKQKFGIDL
PDKEFQQNLVKSYIEGLSWVLQYYYQGVPSWKWYYPYHYSPFASDFVDIGDIQIKFELGE
PFKPFEQLMGVLPAQSKEFLPVPFHKLMTDEASDIIDFYPEKFKIDLNGKRYAWQGVALL
PFIDEPRLLRAMESVYPQLTTDETMRNTCGSEVLCFSNSHKLYNILCPLYSNQDSDKPIP
LDPTISDKMIGFVSKDPNFVPKSTFRSPFVEKNMPDIIDRSLSIFYYLPAKTAGNAHKSI
LLRNVRMDPPVLGWEDHECVRSGSRGRGRGRGRGSPRDDRTYHNNRTYHDNRTYHNNNRT
YHDNRTYHNNRTYHDNHSYQDNRTYPNNRTYPNNRTYHNNRHDNRDTHI
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgggtggttatttgacaaatagtggaaatgtggatttaaaagggttacaatatttagtc
acagaacttggcaaacaagaagatgatatttttattcgacgacatagaaatgagcaaagg
cgagcacctccacctccacctccaaaacgtcaaaagactaaaccgaataaagtcactgac
gtcaatcagccaccagaatcatcccaaaacgaaattgataacttacaaaacttgaataat
gaatgtgttacacctagcctgcctcatttaccaattggaatgcctttactcccagtgaaa
ggatttgactcgcaactacgtgcaaaatcaaatcaagaagttgttactaatagacaagaa
ttacggatagctaatataaatgctgcacaatcattgaaggcagagttaaatagttccagt
gcccctgtttcaacagcaaatattgatatacaaatcaataaaaacgtggattctgatatt
tctgtttctgagacaattaaacgagatactggtgataaggttatgttagctacaaagaga
aaagcagatatattggacgatgaaattccaattacttccgaaagggatgacgatgttaat
gatgatgacgatgactcaccgagcgtatcaaaagatagtgaggatgttgttgatccaatt
agattatgggaaacaggatttaaagagagatattataaacagaaatttggtattgaccta
ccagacaaagaattccaacaaaatctcgtgaagagttatattgaaggcctatcttgggtt
ctacaatattattatcagggtgttccctcttggaaatggtattatccttaccattattcg
ccattcgcatcagacttcgttgatattggtgacattcaaattaaattcgaattgggcgaa
cctttcaagccattcgaacaattaatgggtgtactgccagcacaaagtaaagaattttta
ccagtgccttttcataaacttatgactgatgaagctagtgatataatagacttttatcca
gaaaaattcaaaatagatttaaacgggaaaagatacgcgtggcaaggagttgctttactt
cctttcattgatgaaccacgtttgcttagagccatggaatcggtttatccccagttaaca
accgatgaaactatgagaaacacatgtggatccgaagtcctctgctttagcaacagtcat
aaattatataatatattatgccccttatattcaaaccaggactcggacaagcctatacca
ttggatccaaccattagcgacaagatgattggatttgtttcaaaagatccaaattttgta
cctaaaagtacgtttcgttcaccttttgttgaaaaaaacatgccagatattattgataga
tcattgagtatattctattatcttcctgctaaaacagctggcaacgcacataagtctatc
cttttacgaaacgtcagaatggatcctccagttttaggatgggaggatcatgaatgcgtg
agaagtggtagtagaggaagagggagaggaaggggaagaggttctccaagagatgatcgc
acttatcacaataaccgcacttatcacgataaccgtacttatcacaacaataaccgcact
tatcacgataaccgtacttatcacaataaccgcacttatcacgataaccatagttatcaa
gataatcgtacatatcccaataaccgcacttatcccaataaccgtacttatcacaataac
cgtcacgataatcgtgatactcatatataa
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