Rhizophagus irregularis: OCT59_002009
Help
Entry
OCT59_002009 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
rie Rhizophagus irregularis
Pathway
rie03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
OCT59_002009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rie03021
]
OCT59_002009
03019 Messenger RNA biogenesis [BR:
rie03019
]
OCT59_002009
Transcription machinery [BR:
rie03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
OCT59_002009
Messenger RNA biogenesis [BR:
rie03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
OCT59_002009
U7-dependent histone pre-mRNA processing factors
OCT59_002009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Lactamase_B_3
Lactamase_B_2
Beta_lactamase3
DUF5097
Motif
Other DBs
NCBI-GeneID:
36859498
NCBI-ProteinID:
XP_065995380
LinkDB
All DBs
Position
10:2213384..2216488
Genome browser
AA seq
720 aa
AA seq
DB search
MTTQRTNFEIPINDENDVLQVTALGAGNEVGRSCIVIQYKGKTIMLDAGVHPAYNGLAAL
PFYDEIDPATVDALLISHFHLDHAASLPYFLEKTTFQGRVFMTHPTKAIYKWLLSDYVRV
SNVALLDDMLYDEQDLLLSYDKIEAVDYHQEVEFEGIKFTSYNAGHVLGAAMFLIEIAGV
KILYTGDYSREEDRHLMAAELPSVRIDVLITESTYGVQSHEPRLEKEARFTGLVHDIVQR
GGRCLMPVFALGRAQELLLILDEYWKAHPELESVPIYYASSLAKKCIAVYQTYINMMNEK
IRKQFAINNPFIFNHISNLKNMDDFDDVGPCVMMASPGMLQSGLSRELFERWCPDKRNGL
VITGYCVEGTLARHAMTEPSEIISMSGATIPLRMSVNYVSFSAHVDFIQNSQFIDEIKAP
HVVLVHGETNSMARLKSALQSKFAERDDKIKIYSPKNCEPVKLYFRGEKLAKAIGRLAAK
YPIENQIVSGIIVSKDFQFNIMDANDLKDFCGISTSTIMQKPTIAYHSSFSLLKYHLEQM
FGTLKETFDSEQIPTLTILNSIEVKHISKSQLRLEWSSTSMNDKIADSVIAVILNIENSP
ASVKVTNQSHPNHMPEGNYDIVMDNNKIDFDEKGLEESIESSQSLTIHDAVVMYLRNQFG
EAFSKENSENEIVIKVDNSYAEININTMEIRTEDDLLRNRITRMMPRIAKILLPLETCPE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgacaactcagcgaaccaactttgaaattcctataaacgacgaaaatgacgttttacaa
gttacggcgttgggtgctggtaacgaagtgggaaggtcctgtattgtcattcaatacaag
gggaaaacaataatgcttgatgcgggtgtccaccctgcatataatggtttggctgcactt
ccgttttatgatgaaattgatcctgctactgttgatgctttacttattagccattttcat
ttggaccatgctgcttctttgccatattttttggaaaagacaacctttcaaggacgagta
tttatgacacatcctacaaaggcgatttataaatggttattgtctgattatgtaagagta
agcaatgttgcattattggatgatatgctctatgatgaacaagatcttttgcttagttat
gataaaattgaagctgtagactatcatcaggaagtagaatttgaaggaataaaatttact
agttataatgcaggtcatgttttaggtgcagctatgtttctgattgaaatcgcaggtgtt
aagattttatataccggagattattctcgtgaagaagacagacatttaatggctgctgaa
cttccatcagtgagaattgatgtgttaatcacagaatccacatatggagttcagagtcat
gaacctaggttagaaaaagaagcaagatttactgggttggtccatgacatcgtacaacgt
ggtggtcgttgtttgatgccggttttcgctttaggccgtgcccaagaattacttctaatt
cttgatgagtattggaaagcacatcctgaactagaatcagtacctatttattatgcctcg
tctttagcaaagaaatgtatagcagtttatcaaacttatattaatatgatgaatgaaaag
attcgcaaacaatttgccataaacaatccttttatttttaatcatatctcgaatcttaaa
aatatggatgattttgatgatgtcggaccttgtgttatgatggccagtcccggtatgtta
cagagcggattgtcaagagagttattcgaaagatggtgtccagacaaacgaaatggcctt
gttataactggatattgtgttgagggtactttggctcggcatgctatgactgagccgtca
gaaataatttctatgtctggtgctactattccactgagaatgtcggttaattatgtttcc
ttctcagctcatgttgattttattcagaatagtcaattcattgatgaaataaaagctcct
cacgtggtacttgtgcatggagaaacaaattctatggctaggttgaaatccgcgttacag
agcaagtttgctgaacgtgacgataaaatcaaaatttattcaccaaaaaattgtgaacct
gtaaagttatattttagaggggaaaaattagctaaggctataggtcgcttagctgcaaag
tacccaatagaaaatcaaattgtatctggcatcatagtatcaaaagattttcaatttaat
attatggatgcaaacgatctcaaagatttttgtggtatctctacttcaacaataatgcaa
aaaccgactattgcatatcattcttctttttcactattgaaatatcaccttgagcaaatg
ttcggaactctgaaggaaacttttgatagcgaacaaattccaactttaacgatattaaat
tcgattgaggtaaagcatattagtaagagccaacttcgactagaatggtcaagtacttct
atgaacgacaagattgctgattctgtgatagcagtaatattaaacattgaaaacagccct
gcctcagtaaaagtcacaaatcaatcccatcccaatcatatgcctgaaggaaattatgat
atcgttatggataataacaaaatagattttgatgagaaaggacttgaagaatctatagaa
tcatcacagtcactaacaatacacgatgctgttgtgatgtatttgagaaaccaatttggc
gaagcatttagcaaagaaaattctgaaaatgaaattgtcatcaaagttgacaattcttat
gcagaaattaatattaataccatggaaataaggactgaagatgatttattacgaaatcga
ataactagaatgatgccacgcatcgctaaaattttgttacctttagaaacttgtccggaa
taa
DBGET
integrated database retrieval system
