Rhizophagus irregularis: OCT59_004155 Help Entry OCT59_004155      CDS       T10295                                  Name (RefSeq) Pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism rie  Rhizophagus irregularis Pathway rie03040   Spliceosome Brite KEGG Orthology (KO) [BR:rie00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     OCT59_004155  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:rie03019]     OCT59_004155    03041 Spliceosome [BR:rie03041]     OCT59_004155 Messenger RNA biogenesis [BR:rie03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      OCT59_004155 Spliceosome [BR:rie03041]  Complex B   Other components    Prp19-related factors     OCT59_004155  Complex C     OCT59_004155 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf TPR_19 TPR_2 TPR_12 TPR_8 TPR_15 NRDE-2 TPR_1 DUF5575_C Imm71 LemA Motif Other DBs NCBI-GeneID:  36870573 NCBI-ProteinID:  XP_025171718 LinkDB All DBs Position 12:2962658..2966315 Genome browser AA seq 840 aa AA seqDB search MEVDGNDENQGFYMIEELDIPFEEEILRNPYTLKSWLRYIDHKSEQQLSQQIFVYERALK ELPGSYKLWKQYLDLRREHVQELNPVRFEKEYLKVNNCFERALVLLHKMPRIWLDYCSFM MNQCRVTKTRRIFDRALKALPITQHPRIWELYLKFARSVGGETAIRLYRRYLKLEPDRVE EYIELLLSLNRYDEAAKRLAQTVNNDRFQSMFGKSNYQLWMELCDLICEHPHEIKSLKVE PIIRSGIRRFTDQVGRLWNSLANYWIKLGHFEKARDVFEEGISTVMTVRDFTQIFDTYAK AEETVIERKMEEAAERAEEGIDDPKADSELDLRLMRFEQLMDRRPFLVNDVLLRQNPNNV HEWEKRVALWKDNHTKVVETYTKAMRTIDPKKATGKFHVLWTNFAKFYEQGGDIENARTI FEKATHVDFKNVNDLAALWCEYAEMELRLENYNRALDVMGRATVPPRNPNVDFRDESLPV QLRVFKSIKLWSFYVDLEESIGTIESTRAVYDRILELKIANPQIIINYANFLEENKYYEE SFKVYERGVELFNYPISFEIWNVYLTKFINRYGGLKLERARDLFEQALEKCPPKYAKPLY LMYGKLEEDYGLARHAMRIYDRATRSVSDEDRFEMFNFYIAKASANFGVTYTREIYERAI EVLPDKEAKDMSLKYAELERKLGEIDRARALYAHASQFCDPRTVPSFWQTWHDFEVKHGN EDTFKEMLRIKRSVQAQYNTEVNFISAQILATRQAQQSGQESGQVQGVPSNGSSVSEISV PGTSNAMQIAEQEAMQTKANLTSVSKSMTFVPSSTQVNKENVSSNPSNPDEITMDMDDDL NT seq 2523 nt NT seq  +upstreamnt  +downstreamnt atggaagttgacggcaatgatgaaaaccaagggttttatatgattgaagaacttgatatt ccttttgaagaagaaattttacgcaatccttatacattaaaatcatggcttcgatacatc gaccataaatctgaacaacaattgtcacaacaaatttttgtttatgagcgtgctctcaaa gagttacctggttcttacaaattatggaaacaatacttagatcttcgaagagaacacgtt caagagttaaatcctgttagatttgaaaaagaatatttgaaagttaacaattgttttgaa agagcattggtcttgttacataaaatgcctcgaatttggttagattattgtagctttatg atgaatcaatgtagagttacaaaaacacgtagaatctttgatcgagcattaaaagcatta ccaattacacaacatccaagaatttgggagctatatttaaaatttgccaggtcggtggga ggtgaaacagcaattcgattatatcgaaggtatcttaagttggaaccagaccgtgttgaa gaatatatcgagttgttattatcactcaatcgatacgatgaggctgctaaacgacttgct cagactgtcaataacgatcggttccaatcaatgttcggcaaatccaactatcaactgtgg atggaactttgcgatttgatctgtgaacatccacatgaaattaaaagtttaaaagttgaa cctattataagaagtggaatccgtagatttaccgatcaagtcggaagattatggaattcc ttagcaaattattggatcaaattgggacattttgaaaaggcaagagatgtatttgaagag ggtattagcactgtaatgactgtcagagattttacacagatatttgatacttatgcgaag gctgaagagaccgtcattgaaagaaaaatggaagaagcagcggagagggcggaagaagga atagatgatccaaaagcagattcagaattagatctaaggttgatgcgatttgaacaatta atggatcgtagaccttttttggtgaatgacgttttgttgagacagaacccaaataatgtc catgaatgggaaaaaagggtggcattatggaaggacaaccacactaaggttgttgaaaca tatacgaaagcaatgagaactattgacccgaaaaaagcaactggcaaatttcatgtgtta tggacgaactttgccaaattctatgaacagggtggtgacattgagaatgcccgaacaatc tttgaaaaagctacacatgttgactttaaaaacgttaatgacttggctgcgttatggtgt gaatatgcagagatggagctacgacttgagaattacaacagagccttagatgttatgggt cgtgctacagttcctcctcgcaatccaaatgtggatttccgtgatgagagtttaccggtt caactacgcgtttttaaatcaataaagttgtggtcattttacgttgatcttgaagaaagt attggcacgatagaatctactagagcagtatatgatcgaatattagaattgaagatcgct aatcctcaaataatcattaattatgcgaattttctagaagagaataaatattatgaagaa agttttaaggtatatgaacgaggcgtagaacttttcaattatccaatttcattcgagatt tggaatgtatatttgacaaagtttattaatagatatggaggtctcaagttagaacgtgct agagatctgtttgaacaagctcttgaaaagtgtcctcctaaatatgctaagcccttatat cttatgtatggtaaattagaagaggactatggtttagcacgacacgcgatgcgtatttat gatcgcgcaaccagatcagtatctgatgaagatcgattcgagatgtttaatttttatatc gccaaagcgagtgctaactttggtgtaacttatacccgtgaaatttatgaacgggcaatc gaagttttacctgataaagaagctaaagatatgtctttgaaatatgctgaattggaacgt aaactaggggaaattgatagagcaagagcgttatatgctcacgcatctcaattttgtgat ccaaggacggtaccatctttctggcaaacgtggcatgactttgaagtcaagcacggtaac gaagatacatttaaagaaatgcttcgaatcaagcgaagtgtacaagctcaatataataca gaggttaattttatatccgcccaaatacttgctactagacaagctcaacagagtggtcaa gagagtggtcaagtgcaaggagtaccttcaaatggatcatcagtttctgaaatttcagta ccggggacttctaatgcaatgcaaattgcagaacaagaagccatgcaaactaaagcaaac ttaacttctgtttctaaatcaatgacatttgtcccttcttctacgcaagtaaataaggaa aatgtatcctctaatccatcgaatcccgacgaaataactatggacatggatgatgatctg taa

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