KEGG   Rhizophagus irregularis: OCT59_004285
Entry
OCT59_004285      CDS       T10295                                 
Name
(RefSeq) uncharacterized protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
rie  Rhizophagus irregularis
Pathway
rie03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rie00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    OCT59_004285
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rie03021]
    OCT59_004285
   03019 Messenger RNA biogenesis [BR:rie03019]
    OCT59_004285
Transcription machinery [BR:rie03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     OCT59_004285
Messenger RNA biogenesis [BR:rie03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     OCT59_004285
SSDB
Motif
Pfam: zf-CCCH zf-CCCH_2 zf_CCCH_4 Torus
Other DBs
NCBI-GeneID: 36866185
NCBI-ProteinID: XP_025181950
LinkDB
Position
12:3475839..3477115
AA seq 212 aa
MAGDVFVTCCESLSRFEKSLGGDVKTTTAGRLSSWINTKRRVLIYLSIYIDTIFYYFEQF
IHDKIIPQKKVEQSHDAIKKRRSANDIVCKHWLIGSCFRINCPYLHSYEFDHMPLCPTLK
KFGSCNREVCVFSHSQSINSNKSRKECRSYKRGFCKYGSTCKYKHTRRVLCDLYLTGFCT
RGPTCSNAHPRHFTNSLKYRNTRKSMVISLPN
NT seq 639 nt   +upstreamnt  +downstreamnt
atggcgggagacgtatttgtcacatgttgcgagagtttatcacgttttgaaaagagtctt
ggaggtgatgttaaaacgacaacggccgggagactttcttcttggattaatacaaaaaga
cgtgttctgatttacttatccatctatattgatactatattttattattttgaacaattt
attcatgataagatcatacctcagaaaaaagttgaacaatcacatgatgcaataaaaaaa
cgacgaagcgctaatgatatcgtgtgtaaacattggttaattggatcatgttttcgtatt
aattgtccttatttgcactcttacgaattcgatcatatgccattatgtcctactttgaag
aaatttggatcatgtaacagagaagtttgtgtattttctcatagtcagagtattaacagt
aataaatctcgaaaagaatgtcgatcttataaacgtggattttgtaaatacggatcaact
tgcaaatataagcatacacgtcgtgttttatgtgatctttacttgacaggattttgtacg
cggggaccaacatgttcaaacgcacatccaaggcactttaccaattctctaaaatacaga
aacacacgtaaaagcatggtaataagcttaccaaattaa

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