Rhizophagus irregularis: OCT59_004381
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Entry
OCT59_004381 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K14320
aladin
Organism
rie Rhizophagus irregularis
Pathway
rie03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
OCT59_004381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rie03019
]
OCT59_004381
Messenger RNA biogenesis [BR:
rie03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
OCT59_004381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
ANAPC4_WD40
WD40_Prp19
Beta-prop_IFT140_1st
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
WDR55
Beta-prop_EML
Beta-prop_RSE1_2nd
Beta-prop_EIPR1
eIF2A
Beta-prop_WDR75_1st
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
36866642
NCBI-ProteinID:
XP_025180685
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Position
12:3894888..3897177
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AA seq
484 aa
AA seq
DB search
MSLDFSQILAPSLNEVSIAEIEGKILNLGCAKDQNLTHYINSEGIVFPNLQVPYQLSHPD
LVHLGTRRVVTDLPTSPTAYGRFMDSVKHSIDEQINQAQTYIQEVTQNIKDMLPSFLNNY
IFNADTEEYMQSLRMKIDRYPAKIIDWHPYFSIFAVAHRVDVILLYDLRVEEWFPEVLEN
SLQKEITCMAWKPLGGNILAVGCRRGICLWELSLEQKKESVPTRLPAWMRHLHYPGHENI
VSLAWHPHGYSLATGSADGSVILWDTAFETGTPLTRNRKVTFLSWSPVGEFLFSSSLDGK
IEVWETQRWTSKTITSNGYPVETGCWTTDGRALFLGFDGYEGEILVLSISPNFDYEWLPK
IDLSPIPECAGIGIEQLAIDPNGERLIACFKNTQLFKDTPLLLVFDAKLPSQVSKKANLL
NFPRTMRGPAWNDPDDQGAFLTQSDPKPVSLSFAKQFTRGSLLSPVWGDGQISFIPFLYN
KANK
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttagatttttctcaaattttagctcctagtttaaatgaagtctccatagcagaa
atcgagggaaaaattttgaatttaggatgtgccaaggatcaaaacctcacacattacata
aattccgagggtattgtgtttccaaacctgcaagtcccttatcaactttcgcatccagat
ttagttcaccttggtacacgaagagttgtaactgacctaccaacgtcacccaccgcttat
ggacgatttatggattcagttaagcattcgattgatgagcaaataaatcaagctcaaaca
tatatacaagaagtaactcaaaatattaaagatatgcttccatcattcttgaataattac
atttttaatgccgataccgaagaatatatgcaatcgcttcgtatgaaaatagatcgttat
cctgcgaaaattattgattggcatccatatttttctatatttgcagtagcccatagagtg
gatgtcattttgctatatgatttacgtgttgaagaatggtttcccgaagtcttagagaat
agtttgcaaaaggagattacatgtatggcttggaagccattaggcggaaatatcttagca
gtcggatgtcgacgtggaatttgtttatgggaactttcacttgaacagaagaaagaatcg
gtaccaacgcgtcttcccgcgtggatgcgtcaccttcattaccctggacacgaaaatatt
gtttcgttagcttggcatccacatggatactcattagcaacaggttcggcggatggttca
gtaattctttgggatacagcgtttgaaacaggaacacctttaacaagaaatcgcaaagtt
acgtttctgagctggagtcctgttggagaatttttattttcatcatcattagacggtaaa
attgaagtatgggagactcaacgatggacatccaaaacaataacttcgaatgggtatccc
gtcgagacaggatgttggacaacagatggacgtgctttattcttgggattcgacggatat
gagggtgaaattcttgtactttctatatctccaaactttgattacgaatggttacctaaa
atagatttatctccaattcctgaatgcgctggtataggaattgaacaactggcaattgat
ccgaacggcgaacgtcttattgcatgtttcaaaaatacgcaattgttcaaagatacacca
ttgttacttgtttttgatgctaagttaccatcgcaagtgtcaaagaaagccaatcttttg
aattttccaagaacgatgcgaggacccgcatggaatgatcctgacgatcaaggtgcattt
ttaacacaatctgaccccaaaccagtatccctaagctttgctaaacaatttactagagga
tctttattaagtccggtatggggagatggccaaatatcttttataccatttttatacaat
aaagctaataaataa
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