Rhizophagus irregularis: OCT59_005427
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Entry
OCT59_005427 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
rie Rhizophagus irregularis
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rie03041
]
OCT59_005427
Enzymes [BR:
rie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OCT59_005427
Spliceosome [BR:
rie03041
]
Complex C
Other components
Complex C specific factors
OCT59_005427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
ABC_tran
RsgA_GTPase
AAA_23
AAA_30
T2SSE
AAA_29
Motif
Other DBs
NCBI-GeneID:
36870953
NCBI-ProteinID:
XP_025170874
LinkDB
All DBs
Position
13:3800770..3804179
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AA seq
685 aa
AA seq
DB search
MAFWKPGTVAPGISVDREAEKETNENLVTFVNYDTNLSIQQQRKGLPIFKSRDQILYLVE
QYQTTIIVGQTGCGKSTQLPQYLHEAGWTVGGRIVACTQPRRVAAVTVADRVASEMNVKL
GNEVGYSIRFEECYDPNLTSIKYMTDGMLFRETFLDPLLTQYSVIMIDEAHERSLYTDLL
LGILKKIQKRRPELRLIISSATLDAEAFYEFYNTNTTNDSSKDNVSIISLEGRMFPVDIH
YLEEPCQDYVETAIQTAFDIHVKEPPGDILIFLTGRDEIDKTVGEIFQRATTLPRSAMKI
KPLPIYAGLPSEQQLEIFEQTPQNTRKVVVATNIAEASITIGGIVYVIDCGFVKLRAYNP
KTGMESLTVVPISKASAQQRAGRAGRVMPGKAYRLYTEDSFYKLRDASIPEIQRSNLAQV
VLHLKALGIDNVLRFDFMTPPPAELMIRALELLYSLKALDDYGRLTMPLGMQLAEFPVDP
MLGKILLDSYKYQCAEEMLTIAAMISVQNVFVTPSSPSAEFEEEKRKFAVEEGDHITSLN
VFNAFVTRGKKSARWCHQRYLNFRALSRALSIREQLKKYLVRFDVPIESCGNDTVKIRKC
LVSGYFAHAAKMQSDGSFRSVRDNVELHVHPSSILFTRNAPWVIFHEVVSTTKAFMRELT
IIDPAWLTELAPHFYEIRKTSLPAH
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttggaaaccaggaactgttgcaccaggaataagtgttgatcgcgaggcagaa
aaagaaacaaacgaaaacctagtgacctttgttaattatgacactaatttatcaattcaa
cagcaaagaaaggggttaccgattttcaaatcacgtgatcaaatactttatctcgtggaa
caatatcagacaacaattatcgttggacaaacaggttgtggcaaatcaacgcaattgccc
caatatcttcatgaagcgggctggacagtaggtggtcggattgtagcttgtactcaacct
cgtcgcgtggccgctgtgacggttgctgatcgcgttgcttctgagatgaatgtaaagctt
ggcaatgaagtcggatatagcattagattcgaagaatgttatgatccaaatttaacaagt
atcaaatacatgaccgatggcatgttgtttcgagagacatttcttgatcctttattaaca
caatacagtgttattatgattgacgaagctcatgagcgcagcttatatactgatcttttg
ttgggaattctgaaaaaaattcagaaaagaagaccagaattaagacttattatttcttct
gctacattggatgcagaagcattttatgagttttataacactaatacaacgaatgattct
agtaaggataatgtatctataatttctttggaaggtaggatgtttccagtggatatacat
tacctagaagaaccatgtcaagattacgttgaaactgcaattcaaaccgcttttgatatt
catgtaaaggagcctccaggagatattcttatatttttaactgggcgtgatgaaattgac
aaaactgttggagaaatttttcaaagagctacaaccttacctcgatcggccatgaaaatt
aaaccgttacctatttatgctggattaccttccgagcaacaattggaaatatttgaacaa
actccacaaaatactcgcaaagtagtagtggctactaatatagccgaagcttctattacg
ataggaggaattgtatacgttatcgattgtggctttgttaaattacgagcttataatccc
aaaactgggatggaaagccttaccgtggttccaatatccaaagcttcggctcaacaaagg
gcaggtcgtgcgggtagagttatgcctggaaaagcatatagattgtacacagaggattca
ttttataaattgagagacgccagtatcccagagatacaaagaagcaatctggctcaagtt
gttctccatttgaaagcattaggaattgataacgttttaagatttgattttatgacaccc
ccacccgctgaacttatgatacgagcgttagaattattatattctttgaaagcacttgat
gattacggtcggcttaccatgccattagggatgcaattagcagaatttcctgtcgatcca
atgctcggaaaaattttactggattcgtataagtatcaatgtgctgaagaaatgcttact
atagctgcaatgatatcagttcagaatgtttttgtcactccttcaagtccatcagctgaa
tttgaagaagagaaacgaaaatttgctgttgaagaaggtgaccatataacatcattgaac
gtatttaatgccttcgtcacccgtggaaagaaatctgcaagatggtgtcatcaacgttat
ttaaattttcgtgcactttctcgcgctttatcaattcgtgagcaattaaaaaagtattta
gtaagatttgatgtaccaattgaatcatgtggaaatgacactgtgaaaattaggaaatgt
cttgtcagtggatattttgctcacgctgctaagatgcaatctgatggatcgtttagatct
gttagagacaatgttgaattacatgtacacccatcttccatattatttactcgtaatgct
ccttgggttattttccatgaagttgtttccacaactaaagcatttatgcgagagttaaca
ataattgatcctgcctggctaactgaattagctcctcatttttatgaaattaggaaaaca
tccttaccagctcattga
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