Rhizophagus irregularis: OCT59_005581
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Entry
OCT59_005581 CDS
T10295
Name
(RefSeq) poly(A) binding protein Crp79 variant 2
KO
K02927
ubiquitin-large subunit ribosomal protein L40e
Organism
rie Rhizophagus irregularis
Pathway
rie03010
Ribosome
rie04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
OCT59_005581
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
OCT59_005581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
rie03011
]
OCT59_005581
04121 Ubiquitin system [BR:
rie04121
]
OCT59_005581
Ribosome [BR:
rie03011
]
Ribosomal proteins
Eukaryotes
Large subunit
OCT59_005581
Archaea
OCT59_005581
Ubiquitin system [BR:
rie04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
OCT59_005581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Ribosomal_L40e
Rad60-SLD
Ubiquitin_2
Rad60-SLD_2
TBK1_ULD
Dsc3_N
DUF2604
OTU1_UBXL
Plexin_RBD
Ubiquitin_5
RA_2
UBL_UBAC1
Motif
Other DBs
NCBI-GeneID:
36878522
NCBI-ProteinID:
XP_025167527
LinkDB
All DBs
Position
13:4425725..4426976
Genome browser
AA seq
128 aa
AA seq
DB search
MQIFVKTLTGKTVTLEVDSSDTIANVKQKIQDKEGIPPDQQRLIFAGKQLEDARTLSDYN
ITKESTLHLVLRLRGGIIEPSLKALASKYNCDKMICRKCYARLPPRATNCRKKKCGHTNQ
LRPKKKLK
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatctttgttaaaactctaaccggaaaaaccgtcacccttgaggttgatagttca
gatacgattgctaatgttaagcaaaagattcaagataaagaaggtatccctccagatcaa
cagcgtttgatttttgccggtaaacagctcgaagacgcacgtacattatcggattataat
ataactaaagagtcaacactccatttagtattacgtttacgtggtgggattattgaacct
tcattaaaagcgctggcttcaaaatataattgtgataaaatgatttgtcgtaaatgctat
gcgagactaccccctcgtgctaccaactgtcgtaagaaaaagtgtggacatactaatcaa
ttgcgtccaaagaagaagcttaagtaa
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