Rhizophagus irregularis: OCT59_008108
Help
Entry
OCT59_008108 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
rie Rhizophagus irregularis
Pathway
rie03410
Base excision repair
rie03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OCT59_008108
03450 Non-homologous end-joining
OCT59_008108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rie03400
]
OCT59_008108
Enzymes [BR:
rie01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OCT59_008108
DNA repair and recombination proteins [BR:
rie03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
OCT59_008108
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
OCT59_008108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
HHH_8
DNA_pol_lambd_f
BRCT_2
NTP_transf_2
Motif
Other DBs
NCBI-GeneID:
36869493
NCBI-ProteinID:
XP_025174368
LinkDB
All DBs
Position
16:complement(1567761..1571030)
Genome browser
AA seq
825 aa
AA seq
DB search
MSQESKKDNSTFNRHDEISFRDEDYNMERERVSSSLNSTFLGEMESLDILSSQEVNPFTM
LDNVDDEDDPKEELAKQKPSKAENDVKSSDAAPRAVGAGLPSKVSSFSVLSKSINDRKKA
VYEFVVPNNNVKSGDVTKKQQKSRKIIKNPTINTSKSKLLPNLSQLKTVQQQSQLEDLPK
PKRGRKKKNIVNDDDTNLLELFNNSSKPEEGLFSKLRILFIPNKIDKVRLSLMKSKVLDK
GGIIEESIETAKNVTHVITELNGNQLVSMFGIRKLKNFKDAAIIKPDWISESIMLGKLRD
TKSYAVLYTEESNDTNIASSSQTQNLKRPHDEQKAEKQETNLENHETPDKKRRIYSPKPL
SSDIIQECVSSLESNINNDTSFTDSTNNDTTCNVMSDDPLSEMIAETKRLVEAGLYVDDE
GDDDESTQSNNTTTDLNEEIENLNEEVVTDSNNSETNSGETNEQTNNSTETKTSSFKAKN
FRGQNSFACMHSHSYGETNNNPNKLIIEKLQVLLDHYTRMKDEWRILSYRKAISAIKKYK
KPITSYEEAKKIPGIGLRTAEKIAEIIDTGNLKRIDSFSEGDDIIKKFGNVYGVGPSIAM
KWYVKGYRTFEDVLKDEKLTRNQISGILYYDDLQKRIPRDEVTKISEWVTRAALSIDPKL
ECITGGSYRRGNPDCGDVDIMITRNDSDGTTHLGVLSRLVEILRDQGFLTHELVQHNGES
LSAKFMGICKLPEGVHRRLDIFMVPYNEMGAALLSYTGNDIFNRSMRLMARKKKMCLNQH
GLFMNVSRGRDGIKYSEGKIIAQKTEKEICDALGVPWRPPNERNC
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagaatcgaaaaaggacaattcaacctttaatcgtcatgatgagatctcattt
agagatgaagactataatatggaaagggaacgtgtatcatcatctttaaactcaacattt
ttaggtgaaatggaatcacttgatatattatcatctcaagaagttaatcctttcacaatg
ttagataatgtagatgatgaggatgatcctaaagaagaattagccaaacagaaaccttct
aaagcggaaaatgatgtcaaatcaagtgacgctgctccccgtgctgtcggtgccggtctt
ccgtcaaaagtttcttcgttctctgtattgtccaaatccataaatgatcgtaaaaaagct
gtttatgaatttgtagtaccaaataataatgttaaatctggagatgtaacaaaaaagcaa
cagaaatctcgtaaaattattaaaaatcctactataaatacgtcaaaatcaaaattatta
ccaaatttatcacaattaaagacagtacaacaacaatcacaattagaagatttacctaaa
ccaaaacgtggaaggaaaaagaagaatattgtaaatgatgatgatactaacctattagaa
ctttttaataattcatctaaacctgaagaaggattgttttcaaaattgagaattttattt
ataccaaataaaattgataaagttcgtttgagtttaatgaaatcaaaagttttagataaa
ggtggaattattgaagaaagtattgaaactgcaaaaaatgttacacatgttataacggaa
ttaaatggaaatcagttggtatcaatgtttggtattcgaaaattaaaaaattttaaggat
gctgcaatcattaaacccgattggatatccgaatcaattatgcttggaaaactgagggat
actaaatcttatgcagttttatatacggaagaatccaatgatacaaatatcgcttcaagc
tcacaaacacaaaatttgaaaagacctcatgacgaacaaaaagctgaaaaacaagaaacc
aacttagaaaaccacgaaacgcccgataagaaaagacgcatatattctccaaaaccttta
tcttcagatattatacaagaatgtgtttcatccttagaatcaaatataaataacgataca
tcctttacagactctaccaataatgatactacttgtaatgtaatgagtgatgatccgctg
tcggaaatgattgcagaaacaaaacgacttgtagaagctggactttacgttgatgacgaa
ggagatgatgacgaaagcacacaaagcaacaatacaactactgatttaaatgaggaaatt
gagaatttaaatgaggaagtagtgacagattccaacaactctgaaacgaattctggggaa
accaatgaacaaacaaataacagcactgaaactaaaacttcatcctttaaagcgaagaat
ttccgaggacaaaattcctttgcatgtatgcatagccatagttatggggagactaataat
aacccaaataaactaataatcgaaaagctgcaagtattattggatcactatactcgaatg
aaagatgaatggaggattctcagttatcgtaaagcaatatctgctatcaagaaatataaa
aaaccaattacttcatacgaagaagctaaaaaaattcctggaatagggctacgcactgct
gagaaaattgcagagataattgatactggaaatttaaaaaggatagatagtttctcggaa
ggcgatgacataatcaaaaaatttggcaacgtttatggtgttgggccatcaatcgctatg
aaatggtatgtaaaaggatatagaacctttgaagacgtactgaaagatgaaaaattaacg
cgtaatcaaatatcgggcatattgtattatgatgacttgcaaaaaaggataccaagagat
gaagtaacgaagatatcagaatgggtaacacgtgctgcactatcaatagatcccaaatta
gagtgtattacgggagggtcttatagaagaggaaatccagactgtggagatgttgatata
atgataacaaggaacgattctgacggcacgactcatcttggcgtcttgtcaaggctagtt
gaaattttacgtgatcaaggatttttaacacatgaattagtacaacataatggagagagt
ctttccgcaaaattcatgggaatttgtaaattacccgaaggagtacacagacgtttagat
atatttatggtaccatataatgaaatgggtgcggcgttattatcgtatactggtaacgat
atattcaacagaagtatgaggttaatggcccgaaaaaagaaaatgtgcttaaatcaacat
ggattatttatgaatgtttcgcgtgggcgtgacggaatcaaatactctgaaggcaaaata
attgctcaaaaaaccgaaaaagaaatatgtgacgcattaggagttccatggcgtccacca
aatgaaagaaactgttga
DBGET
integrated database retrieval system