Rhizophagus irregularis: OCT59_008227
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Entry
OCT59_008227 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K13095
splicing factor 1
Organism
rie Rhizophagus irregularis
Pathway
rie03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OCT59_008227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rie03041
]
OCT59_008227
Spliceosome [BR:
rie03041
]
Complex A
Other components
Complex A specific factors
OCT59_008227
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
zf-CCHC
KH_1
SLU7_N
DnaJ_CXXCXGXG
DUF8363
KH_12
DUF7351
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
36871483
NCBI-ProteinID:
XP_025169529
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Position
16:complement(2109739..>2112588)
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AA seq
563 aa
AA seq
DB search
MYKPSTITGTNNIPLGKRRLAGGSNEEIEDLAEKKLESNGNSLKRAKEENDQQTDGATEE
RKRKRRSRWGGEETKVDIGVPTAITYNMSKEQLDTYLLHMRLEEIGRKLRLGDYVPPEKE
RSPSPEPIYDSQGKRVNTREYRYRKKLEDERHKLIEEAVRRNPDFKPPADYKKPTKVQDK
VYIPAKEFPEINFIGLLIGPRGNTLKKMESESGAKISIRGRGSVKEGKSRTDAAANANQE
EDLHCLVTADAEEKVAKAVKMINKIIETSASVPEGQNELKRQQLRELAALNGTLRDDENQ
ICTNCGATGHRKYECTETQNFTINLTCRICGGHGHTARDCMERNNPEALQQAKQRDQKLD
SEYLSLMAELGENVESSRSNDPGIKVGHYGPAGGSKPPWASHSALGSPTAPPWASKPAVT
ASNAHPGTNALPPWQQPNIPPPPGLGNAPPPPGLSTTSTPWNTAKSTTYPPPPPPGSSLY
PPAPNVSMYPPPPVAASNYAYTSYNNSSYGATYGTTYSTAAAAAGYPPPPPSTARWQQPP
PPPSAPAPPPPPPPTQPPPPPPK
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgtataagccttcgacaatcactggtacaaataatattcctttgggaaaaaggaggtta
gcaggaggttctaatgaagaaatcgaggatttagcagaaaaaaaattagagtcaaatgga
aactctctcaaaagagcaaaagaagaaaacgatcaacaaacagatggagctactgaggaa
cgtaagcgcaaaagaagaagtaggtggggtggggaagaaacaaaggttgatataggtgtg
ccgactgctattacctacaatatgtcaaaagaacaattggatacttatttgttacatatg
aggttagaagaaattggccgaaaattaagattaggggattatgttccaccagaaaaagag
agatcgccatctccagaaccaatttacgattctcagggtaaacgtgttaatactagagag
tatagatatcgcaaaaagttggaagatgagagacataaattaatcgaagaagccgtacga
agaaatcccgacttcaaacctcccgctgattataaaaagcctacaaaagtacaagataaa
gtgtatattccggctaaagaatttcccgaaattaattttattggtttattaattggcccg
cgtggaaataccctcaaaaaaatggagtcagagtccggtgccaaaatcagcatccgtggt
agaggaagcgtgaaggaagggaaaagtaggacagatgctgctgctaatgcaaatcaagaa
gaagatttacattgtttagtaactgcagatgccgaagaaaaagttgctaaagcagtaaag
atgatcaacaagattattgaaacgtctgcttcagttcctgaaggtcaaaatgaacttaaa
agacaacaattacgtgaattagcagctctaaatggtacacttcgagacgatgaaaatcaa
atttgtactaattgtggcgctactggccatcgcaagtacgaatgtacagaaactcagaat
ttcactattaatttaacttgtcgaatctgtggaggtcatggtcacactgctagggattgt
atggaaagaaataatcctgaagctttacaacaagccaaacagagagatcaaaaattagat
agcgaatatttgagtttaatggctgaattaggagaaaatgttgaatcatcaagaagtaat
gatcctggcattaaagtgggtcattatggccctgctggtggttctaaacctccatgggca
tctcattcagctttaggctctcctactgcaccaccctgggcttcaaaaccggcagtaact
gcttctaatgcacatcccggaactaacgctttaccgccttggcaacaaccaaatattcca
ccaccgccaggattgggtaacgccccacctcctccgggattgtcaacaacttctacaccc
tggaatactgcaaaatctactacttatccaccacccccaccaccaggatcttctttgtat
cctcctgctccaaatgtttccatgtatcctccacctcctgttgcagcatcaaattatgcg
tacacatcttacaacaattctagttatggcgctacttatggcacaacttattcaacagct
gctgctgctgcaggatatccaccccctccaccttccactgctcgatggcaacagccacca
ccacccccttctgctcctgccccaccacctccacctccaccaactcaacctccaccccca
ccaccgaaataa
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