KEGG   Rhizophagus irregularis: OCT59_009180
Entry
OCT59_009180      CDS       T10295                                 
Name
(RefSeq) uncharacterized protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
rie  Rhizophagus irregularis
Pathway
rie03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rie00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    OCT59_009180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rie03021]
    OCT59_009180
   03019 Messenger RNA biogenesis [BR:rie03019]
    OCT59_009180
Transcription machinery [BR:rie03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     OCT59_009180
Messenger RNA biogenesis [BR:rie03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     OCT59_009180
SSDB
Motif
Pfam: zf_CCCH_4 zf-CCCH zf-CCCH_2 Torus zf-CCHC zf-CCCH_4 zf-CCCH_3
Other DBs
NCBI-GeneID: 36873552
NCBI-ProteinID: XP_025183286
LinkDB
Position
17:complement(2070348..2072711)
AA seq 301 aa
MPDTDFFHTNSKNYSFDFEDFIKTEIGLGNNSDSDQICQDFLRGTCTKGMKCEFKHTTNF
REKAVVCKHWLRGLCKKGDQCEFLHEFNMRKMPECWFYSRYGECSNEDCMYLHIDPESKI
KECAWYARGFCKHGPHCRHKHVRKVVCQLYLSGFCPKGSDCPNGHPKYELPTVQRDHDGL
EDEGIQKYSMENEENQRMGQQQQQTPPQQQHQQHQQHQQHQQHHQQHQQHQQHQHQQHQH
QQHQQHQQHQQHQQHQQHQQQHHQHQQQHHNYRSLSEVTCFKCGEKGHFANRCPRGQGNR
Y
NT seq 906 nt   +upstreamnt  +downstreamnt
atgcctgatacagattttttccatacaaatagcaaaaattatagttttgatttcgaagat
ttcattaaaacagaaataggacttggtaacaatagcgattcagatcaaatttgtcaagat
tttttaagaggaacatgtacgaagggcatgaagtgtgaattcaagcatactacaaatttt
cgtgaaaaagctgtagtatgcaaacattggttacgtggactttgcaaaaaaggagaccaa
tgtgaattcttacacgaatttaatatgagaaaaatgcccgaatgttggttctattctaga
tatggtgaatgtagtaatgaggattgtatgtatctacatatcgatccagaatctaaaata
aaggaatgtgcttggtacgcgagaggcttttgtaaacatggtccacattgtagacataaa
catgtacgaaaagttgtatgtcagttgtacttgagtggtttctgcccaaaagggtcagat
tgtcctaatggacatccaaaatatgaattacctacagtacagcgtgatcatgatggactt
gaagatgaaggaattcaaaaatattctatggaaaatgaagaaaatcaaagaatgggacaa
caacagcaacaaacgccgccacaacagcaacaccaacaacaccaacaacatcaacaacat
caacaacatcatcaacagcaccaacagcaccaacagcatcaacatcaacagcatcaacat
caacaacatcaacaacatcaacaacatcaacaacatcaacaacatcaacaacatcaacaa
caacatcatcaacatcaacagcaacatcacaattaccgatctttatctgaagtaacgtgt
ttcaagtgtggagagaaaggacatttcgctaacagatgtccaagaggacaaggaaaccgt
tattaa

DBGET integrated database retrieval system