Rhizophagus irregularis: OCT59_009182
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Entry
OCT59_009182 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
rie Rhizophagus irregularis
Pathway
rie03022
Basal transcription factors
rie03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OCT59_009182
09124 Replication and repair
03420 Nucleotide excision repair
OCT59_009182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rie03021
]
OCT59_009182
03400 DNA repair and recombination proteins [BR:
rie03400
]
OCT59_009182
Transcription machinery [BR:
rie03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
OCT59_009182
DNA repair and recombination proteins [BR:
rie03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
OCT59_009182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
36865532
NCBI-ProteinID:
XP_065999816
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All DBs
Position
17:complement(2073908..2075909)
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AA seq
316 aa
AA seq
DB search
MNALKDTATVNEDDANLLVLIIDTNPLIWTKSAKSLSLKEALRHLLVFINAHLALKHDNE
VAVIASHIGVSKFLYPIPNPSRLSENTDQAVDSNLYQRFKVVNDQVISNMKDLFEDVSTL
NSYPDKASSMIAGALSMALCYTNRIMRADEIGHIKPRILIISISPDSPYQYISIMNCIFS
AQKLGIPIDVCKVHSEETVFLKQAAHLTGGRYLKLQIPQGFLQFLMITFLPDRFTRNYQC
LPGEEKVDFSASCFCHKKMIDIGYVCSVCLSIFCHPLEQCSTCRSSLMLASVNECGLKLL
NGIKKQAKGRESGGST
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctttgaaagacaccgcgaccgtaaacgaagacgatgccaatttacttgttctg
atcatcgatacaaatccattgatttggacgaaatcagcaaaatcactatcattaaaagaa
gctttgcggcatcttctagtattcatcaacgctcatttggcattaaagcatgacaacgaa
gtagctgtcattgcaagtcatattggtgtcagcaagtttttatacccaatacctaatcct
tctagactttccgaaaatacagatcaggcagtggattctaatttgtatcaaaggttcaag
gttgtaaatgaccaagtgataagtaatatgaaagatttgtttgaggatgtatcaacactg
aattcgtatcctgataaagcaagttcgatgatcgcaggagctttatctatggccctttgt
tatactaatcgaattatgagagctgatgagattggtcatataaaacctcgaattttaatt
atatccatttcaccagattcgccttatcaatacatatccataatgaattgcattttctcg
gcacaaaaattaggaataccgattgatgtttgcaaagttcatagcgaagaaacagtcttc
ctaaaacaagcagctcatttaactggtggtagatatcttaaactacaaattccacaaggg
ttcttgcaatttttgatgatcacctttcttcctgatcgatttacgagaaattaccaatgt
ttacctggggaagaaaaagttgattttagtgcttcatgtttttgtcataaaaaaatgata
gatattgggtacgtttgttcggtgtgcttatcaattttttgtcatccattagaacagtgt
tcaacttgcagatctagtcttatgttagcgtctgtcaatgaatgcggattgaagctgtta
aatggaattaagaagcaagctaaaggtcgtgaaagtgggggaagtacttaa
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