KEGG   Rhizophagus irregularis: OCT59_009182
Entry
OCT59_009182      CDS       T10295                                 
Name
(RefSeq) uncharacterized protein
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
rie  Rhizophagus irregularis
Pathway
rie03022  Basal transcription factors
rie03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rie00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    OCT59_009182
  09124 Replication and repair
   03420 Nucleotide excision repair
    OCT59_009182
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rie03021]
    OCT59_009182
   03400 DNA repair and recombination proteins [BR:rie03400]
    OCT59_009182
Transcription machinery [BR:rie03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     OCT59_009182
DNA repair and recombination proteins [BR:rie03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     OCT59_009182
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 36865532
NCBI-ProteinID: XP_065999816
LinkDB
Position
17:complement(2073908..2075909)
AA seq 316 aa
MNALKDTATVNEDDANLLVLIIDTNPLIWTKSAKSLSLKEALRHLLVFINAHLALKHDNE
VAVIASHIGVSKFLYPIPNPSRLSENTDQAVDSNLYQRFKVVNDQVISNMKDLFEDVSTL
NSYPDKASSMIAGALSMALCYTNRIMRADEIGHIKPRILIISISPDSPYQYISIMNCIFS
AQKLGIPIDVCKVHSEETVFLKQAAHLTGGRYLKLQIPQGFLQFLMITFLPDRFTRNYQC
LPGEEKVDFSASCFCHKKMIDIGYVCSVCLSIFCHPLEQCSTCRSSLMLASVNECGLKLL
NGIKKQAKGRESGGST
NT seq 951 nt   +upstreamnt  +downstreamnt
atgaatgctttgaaagacaccgcgaccgtaaacgaagacgatgccaatttacttgttctg
atcatcgatacaaatccattgatttggacgaaatcagcaaaatcactatcattaaaagaa
gctttgcggcatcttctagtattcatcaacgctcatttggcattaaagcatgacaacgaa
gtagctgtcattgcaagtcatattggtgtcagcaagtttttatacccaatacctaatcct
tctagactttccgaaaatacagatcaggcagtggattctaatttgtatcaaaggttcaag
gttgtaaatgaccaagtgataagtaatatgaaagatttgtttgaggatgtatcaacactg
aattcgtatcctgataaagcaagttcgatgatcgcaggagctttatctatggccctttgt
tatactaatcgaattatgagagctgatgagattggtcatataaaacctcgaattttaatt
atatccatttcaccagattcgccttatcaatacatatccataatgaattgcattttctcg
gcacaaaaattaggaataccgattgatgtttgcaaagttcatagcgaagaaacagtcttc
ctaaaacaagcagctcatttaactggtggtagatatcttaaactacaaattccacaaggg
ttcttgcaatttttgatgatcacctttcttcctgatcgatttacgagaaattaccaatgt
ttacctggggaagaaaaagttgattttagtgcttcatgtttttgtcataaaaaaatgata
gatattgggtacgtttgttcggtgtgcttatcaattttttgtcatccattagaacagtgt
tcaacttgcagatctagtcttatgttagcgtctgtcaatgaatgcggattgaagctgtta
aatggaattaagaagcaagctaaaggtcgtgaaagtgggggaagtacttaa

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