Rhizophagus irregularis: OCT59_010917
Help
Entry
OCT59_010917 CDS
T10295
Name
(RefSeq) translation elongation factor EF-1 alpha
KO
K03231
elongation factor 1-alpha
Organism
rie Rhizophagus irregularis
Pathway
rie03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
OCT59_010917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rie03019
]
OCT59_010917
03016 Transfer RNA biogenesis [BR:
rie03016
]
OCT59_010917
03012 Translation factors [BR:
rie03012
]
OCT59_010917
04131 Membrane trafficking [BR:
rie04131
]
OCT59_010917
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rie04147
]
OCT59_010917
Messenger RNA biogenesis [BR:
rie03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
OCT59_010917
Transfer RNA biogenesis [BR:
rie03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
OCT59_010917
Translation factors [BR:
rie03012
]
Eukaryotic type
Elongation factors
OCT59_010917
Membrane trafficking [BR:
rie04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
OCT59_010917
Exosome [BR:
rie04147
]
Exosomal proteins
Proteins found in most exosomes
OCT59_010917
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
DUF34_NIF3
Motif
Other DBs
NCBI-GeneID:
36871711
NCBI-ProteinID:
XP_025168914
LinkDB
All DBs
Position
19:1678537..1680979
Genome browser
AA seq
459 aa
AA seq
DB search
MGKEKTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVL
DKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGT
GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTTNWSEERFNEIVKEVSGFIKRVG
YNPKTVAFVPISGWHGDNMLEESSNMTWFKGWEKEIKGGAKVKGKTLLEAIDSIEPPSRP
TDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKAGMVVTFAPVGLTTEVKSVEMHHEQLVE
GVPGDNVGFNVKNVSVKEIRRGYVCSDSKNDPAKEAASFQAQVIVLNHPGQIGAGYAPVL
DCHTAHIACKFAELQEKIDRRSGKKLEDNPKFVKSGDAAIVKMIPSKPMCVEAFSDYPPL
GRFAVRDMRQTVAVGVIKSVEKVDKSGKTTKAAIKASKK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagaaaagactcacgttaacgttgtcgtcattggtcacgtcgattctggaaag
tccacaacaaccggacatcttatctacaaatgcgggggtattgataaacgtacaatagag
aaatttgaaaaagaagccgcagaacttggaaaaggttcatttaaatatgcttgggttttg
gataaactaaaagccgaacgtgaacgtggtatcaccattgatatcgctctctggaagttc
gagactccaaaatattatgttactgtcattgatgctccaggacatcgtgattttatcaaa
aacatgattactggtacctctcaggctgattgtgctattttgatcattgccgccggtact
ggtgaatttgaagctggtatctccaaagacggtcaaactcgtgaacatgctcttttggca
tatactcttggtgtaaaacaacttattgtcgccgtaaacaagatggacacaaccaattgg
tcggaagaacgttttaatgaaattgtcaaagaagtatcaggctttattaaacgtgttgga
tataatccaaagactgttgctttcgtcccaatatccggctggcacggtgataacatgttg
gaagaatcttcaaatatgacctggttcaaaggatgggaaaaagaaattaaaggtggtgcc
aaagttaagggcaaaacgcttttggaagccattgactcaattgaacctccatctcgacct
accgataaaccccttcgtcttccacttcaagacgtctacaagattggcggtattggtacc
gtgccagtaggtcgtgttgaaaccggtattattaaggccggtatggttgtaaccttcgcc
cctgttggtctcaccactgaagtaaaatcagttgaaatgcaccacgaacaattagttgaa
ggtgtacctggggacaatgtcggttttaatgtcaagaacgtatcagtcaaagaaattcgt
cgaggttacgtctgctccgattccaagaatgacccagccaaggaagctgcttccttccaa
gctcaagttatcgttcttaaccatcctggtcaaatcggtgctggttatgcccctgtattg
gattgccataccgctcatattgcttgtaaattcgctgaattgcaagaaaaaattgatcgt
cgttccggcaaaaaacttgaagacaatcccaaatttgttaagtctggagatgccgctatc
gttaaaatgattccatccaaaccgatgtgtgttgaggctttctctgattatcctccttta
ggtcgtttcgctgtaagagatatgagacagactgtcgctgttggtgttatcaagtccgtc
gagaaagttgataagtcaggaaagactactaaggcagccattaaagcatctaagaagtaa
DBGET
integrated database retrieval system
