KEGG   Rhizophagus irregularis: OCT59_011173
Entry
OCT59_011173      CDS       T10295                                 
Name
(RefSeq) uncharacterized protein
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
rie  Rhizophagus irregularis
Pathway
rie03008  Ribosome biogenesis in eukaryotes
rie03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rie00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    OCT59_011173
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OCT59_011173
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rie03019]
    OCT59_011173
   03009 Ribosome biogenesis [BR:rie03009]
    OCT59_011173
   03016 Transfer RNA biogenesis [BR:rie03016]
    OCT59_011173
   03036 Chromosome and associated proteins [BR:rie03036]
    OCT59_011173
Messenger RNA biogenesis [BR:rie03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     OCT59_011173
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     OCT59_011173
Ribosome biogenesis [BR:rie03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    OCT59_011173
Transfer RNA biogenesis [BR:rie03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    OCT59_011173
Chromosome and associated proteins [BR:rie03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    OCT59_011173
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 CENP-T_C R3H DUF1803
Other DBs
NCBI-GeneID: 36864757
NCBI-ProteinID: XP_025185060
LinkDB
Position
19:complement(2887387..2893704)
AA seq 1371 aa
MGIPKFFRWMSERYPLCSQLITENRIPEFDNLYLDMNGIIHNCSHSNNDMDVHNRVSEDK
IFIEIFNYIDHLFTKIKPKQLFFMAVDGVAPRAKMNQQRARRFRTAAEAAKKAESRGEES
SQEAPFDSNCITPGTEFMTKLSHQLKYFINKKVTEDSNWRNIKVVLSGHEVPGEGEHKIM
EYIRNTKAQVDYNPNVRHCLYGLDADLIMLGLLSHDPHFALLREEVTFGSSKKKKQGRVE
SQNFFLMHLSLLREYLDLEFSILKETLSFEYNLERIIDDFILLALFIGNDFLPHLPNLHI
AEGALGLMFHVYKKVLPAAGGYINDGGLLDVKRLEMIFRELTIFERDVYEGEFVDLKWFK
GKQKKHLEMMEEKKRKEKLVLTPKQREIYNQIKELIKTRTKHHFPADYPARDRAFIKKLA
EELKIHQSVLEDGENKHLFVEYDSEEESSGETREEVYKKYEAAEVIEEDDTETYQEKERK
KDDEAFIEWKRKYYREKLQIDYDNQESMDKIVGSYIEGLQWVLWYYYFGVASWGWFYPYH
YSPKISDLYDLDKIDISFFSSKERPFTPFEQLMGVLPEGSKKFLPKAYQDLLSDPNSPII
DFYPKDFTTDLNGKKQEWEAIVNIPFINQKRLINALKDRKDQLTEEEKKRDTFGDSFLFT
YDPDYKELYPSSLPGFFPDIPYCLCRTEVYHVPTLEGPKFIIKGLCDGVQLGIKAMPGFP
SLQTLKHTAKLLQHGVNVFNSESKNETMVISIVDQFKDMKNIDIAREKVGERIFVGWPFL
QEGKVTAISDEQFRYEFNNGQINKIPHKQEITEKWRRKADKFEQDNSKRYGTIIGKVNVF
AHVLVLKGMKQEQDGALVREFLEEEQEYAIQITVDSVECEDSRYEEKPAAPLAEEFPLAT
EVFYLGNNHYGCPGRVSSNTEENLAVKAIIDKNNSNEPEFGSEVAKAFAARIKYSPSFAV
AKRLSISGLTLSKLTASLHVICKSNSNEQKSTDQRVNLGLNLKFEAKKQKVLGYTRKAKI
KDKDGWEYSEKAIQILAEYKEKFPEFIQGLENKHDKEEIYTAEDFYPKEEAVSKINAIKD
WLKTVEVRDFEKVPLEAEQLDKEAIQEIEEAADDFLKNMVTDQEEFKNLARYQLLKPSHA
STLLQNQKFNLGDRVVFVKDSGNVPIASKGTIVGIEKNNIDVVFDCTFMGGSTLGDRCSN
YRGMTVLANSLLNLTRPQLPVRRSNTGNGRSRHGTNINYQSRYQEALQNGQQYYNSNAYP
YYYNNGYSGRSNRGWGSIIPNGSHQRPPNRSRGASGSNGYIQQSQLHARPISQSQASSGA
TKYGVQNQTHHSYRPRSNGNSFLPGRGNGSRGIHYGGNGISRGRGRGDGKT
NT seq 4116 nt   +upstreamnt  +downstreamnt
atggggattccaaagttctttcgatggatgagtgaaagatatccgttgtgcagccagctg
attaccgagaataggatcccagaattcgataatttataccttgatatgaatggcattatt
cacaactgttctcattcgaataatgatatggatgttcataaccgtgtttccgaagacaaa
attttcatagaaatatttaattatatcgatcatttatttaccaaaataaaaccgaaacaa
ctattttttatggccgttgatggcgttgccccaagggctaaaatgaatcaacaacgtgct
agacgattcagaactgctgctgaagccgctaaaaaagccgaatctagaggtgaagaatca
tctcaggaggcaccttttgatagtaattgtattacaccaggcaccgaatttatgacaaaa
ctttcacatcaactcaaatattttataaataagaaagtgacagaagactcaaattggaga
aatattaaagtagtattatcaggccacgaagtaccaggtgaaggagaacataaaatcatg
gaatatattcgtaacacaaaagcccaagtagattataatccaaatgtcagacattgttta
tatggattagatgcagatttaattatgcttggacttttaagtcatgatccacattttgct
ttactcagagaagaggttacttttggatcaagtaaaaagaaaaaacaaggacgtgtcgaa
tctcaaaatttttttctcatgcatttatcattattgcgtgaatatttggatcttgaattt
tcaatacttaaggaaacactttcttttgaatataatctcgaaagaataatagacgatttc
attttgttggcattatttattggtaacgattttttaccacatttgcccaaccttcatata
gctgaaggggcacttggattgatgtttcacgtatacaaaaaagttttaccggctgctggc
ggttatattaatgacggaggattattagatgtgaaaagacttgagatgatatttagagaa
ttaacaatttttgaaagagatgtttacgaaggtgaatttgtagatttaaaatggtttaaa
ggaaagcagaagaaacatttagaaatgatggaagagaagaagagaaaagagaaattagtt
ctaacaccaaaacaacgagaaatatataatcagatcaaagaattgattaaaacacgcaca
aaacatcattttccggctgattatcctgcacgtgatcgcgcttttataaaaaaacttgct
gaagaattgaaaattcatcaatcagtacttgaagatggagaaaacaaacatttgttcgtt
gaatatgactctgaagaagagtcaagtggagaaacaagagaggaagtttataaaaaatat
gaagctgcagaagtaattgaagaggatgatactgaaacatatcaagaaaaggaaagaaag
aaagatgatgaggcatttattgaatggaaaagaaaatattatagggaaaaactgcagatt
gattatgacaatcaggagagcatggataaaatagttggttcatatattgaaggactgcaa
tgggttctatggtattactactttggtgtagcatcttgggggtggttttatccataccac
tattcaccgaaaatttcagatttgtatgatttagataagatcgatatttcgttttttagc
agcaaggaaagaccattcacaccgtttgagcaattaatgggtgttttgcccgaagggagt
aaaaaatttttgcctaaagcatatcaggatttattgtccgatcctaactctccaataata
gatttctatccaaaagatttcacaacagacttgaatggtaaaaagcaagaatgggaagca
atagttaatatcccattcattaatcaaaaaaggttaatcaatgctttgaaggataggaaa
gatcaattaaccgaagaagaaaaaaaaagggatacttttggtgatagttttttgtttacg
tatgatccagattataaagaactatatccttcatcattaccaggtttttttccagatatc
ccatattgtttgtgtcgtactgaagtttatcatgtcccaactttggaaggtccaaaattt
attataaaagggctttgtgacggagttcaattggggattaaagccatgcctggttttcca
tcattacaaacacttaaacatactgcgaagcttttacagcatggggttaatgtttttaat
tcggagagcaaaaatgaaactatggttatttcaatagttgaccaatttaaggatatgaaa
aatatagatatagcacgtgaaaaagttggtgaaagaatatttgtcggttggcctttcctt
caagaaggaaaagtaacagctatatctgatgaacaatttagatatgaatttaataacggg
caaattaataaaattccacataaacaggaaataactgaaaagtggcgacggaaggccgat
aaatttgaacaagataacagtaaaagatatggaacaataattggaaaagtaaatgttttt
gcacatgttctggttcttaaaggtatgaaacaagagcaagatggcgctctagttagagaa
ttcctcgaagaggaacaggaatatgcaatacaaataacagtcgatagtgttgaatgtgaa
gattctaggtacgaagaaaaacctgctgctccattagctgaggagtttccgttagctacc
gaagtattctatttgggtaataaccattatggatgtcctgggagagtttcttctaacaca
gaagagaatctggctgtgaaagcgatcattgacaaaaataactcgaatgaacctgaattt
ggttcagaagttgcaaaagcttttgctgcaagaattaaatattctccttcatttgctgtt
gctaaaagattgagtataagtggtttaactttaagcaagttaactgctagtttacatgtt
atttgtaaatcaaattcaaatgaacaaaaatcaaccgatcaacgagtcaatcttggtctc
aatttaaaattcgaggcaaagaaacaaaaagtattgggatataccaggaaggctaagatt
aaggataaggatggttgggaatacagtgaaaaagcaatacaaattttggcagaatataaa
gaaaaattcccagaatttattcaaggtttagagaataagcatgataaagaggaaatatat
actgcagaagatttttatccgaaagaagaggccgtgtctaaaatcaatgctattaaggat
tggcttaaaaccgttgaagtgagggatttcgagaaggttccattagaagcagagcaatta
gataaagaagcaatacaagaaatagaagaagctgccgacgatttccttaaaaatatggtt
accgatcaagaagaatttaaaaatttggcgcgatatcaattgttaaagccgtcgcacgca
tcaacacttttacaaaaccaaaaattcaaccttggcgatcgagttgtttttgttaaagat
tcaggaaacgtaccaattgcatctaaaggtacgatcgttggtattgaaaaaaataatatt
gatgtagtattcgattgtacatttatgggcggatctacattgggcgatagatgctcaaat
tatcgcggaatgaccgttcttgccaactctttgcttaacttgacacgaccacagcttcct
gttcgtcgttcgaataccggaaatggtagatcaaggcatggaacaaatattaattatcaa
tctcgttatcaagaggcgctacagaatggacaacaatattataattctaatgcataccct
tattattataataatggctattcgggtcgtagtaatagaggctggggatctattattcca
aatggttcccatcaaagacctcctaatcgttctcggggcgcaagtggatcaaatggttac
atacaacaatcacaattacatgcacgaccaatttcacaatcacaagcatcttcaggtgct
acaaaatatggtgtacaaaatcaaacgcatcattcttatcgtccaaggtcaaatgggaat
agttttttacccggtagaggcaatggaagtcgtggaatacattatggtggtaatggaatt
tcacgaggacgcggaagaggagatggtaaaacataa

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