Rhizophagus irregularis: OCT59_014200
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Entry
OCT59_014200 CDS
T10295
Name
(RefSeq) SM-like degradation of cytoplasmic mRNAs and positively regulates transcription initiation
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
rie Rhizophagus irregularis
Pathway
rie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCT59_014200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rie03019
]
OCT59_014200
Messenger RNA biogenesis [BR:
rie03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OCT59_014200
mRNA degradation factors
5'-3' decay
Lsm complex
OCT59_014200
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
36859554
NCBI-ProteinID:
XP_025179643
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All DBs
Position
21:complement(<3658839..>3659746)
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AA seq
138 aa
AA seq
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MDNFIPGQIFTTSASLVDSVDRKLLVVLRDGRKLIGVLRSFDQFANLVLQDTIERIYVGD
AYGDIPRGIFIIRGENVVLLGEIDLDKEDELPLRQVPVEEILLAQREEMEARQKREKLKN
KLLHDQGFIFSISISISS
NT seq
417 nt
NT seq
+upstream
nt +downstream
nt
atggataattttattccaggacagatttttacaacttctgcaagtttagtagatagtgtt
gatagaaaattgttagtagtgcttcgagatggtcgcaaacttattggtgtattaaggtct
tttgatcaatttgcaaatttagttttacaagatacgatagagcgcatatatgttggtgac
gcgtatggagatataccgcgtggaattttcataattagaggcgaaaatgtggttctatta
ggtgaaattgatcttgataaggaggatgaattaccgcttcgacaggtaccagttgaagaa
attctattggcacaacgagaggaaatggaagcaagacaaaaacgtgaaaaacttaagaat
aaactattacatgatcaaggatttatttttagtataagtatatcgatcagttcatga
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