Rhizophagus irregularis: OCT59_018041
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Entry
OCT59_018041 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
rie Rhizophagus irregularis
Pathway
rie03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OCT59_018041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rie03041
]
OCT59_018041
Enzymes [BR:
rie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OCT59_018041
Spliceosome [BR:
rie03041
]
Complex A
U2 snRNP components
U2 related factors
OCT59_018041
Complex B
OCT59_018041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
36863941
NCBI-ProteinID:
XP_066004421
LinkDB
All DBs
Position
27:608049..613009
Genome browser
AA seq
1087 aa
AA seq
DB search
MARHSRSRSRSRSPHKRRKHSHRHDRNRSRERAKETTNEKRDRSRSRERRSGRDRERDRD
RDREREKDRHRDDRDHKRSRHSRSEIDREDSYTKSHSTKETEDRKYKNNITVESGNSTQD
QKIISRSSGTVLNNVSGEMKDKYKDINKQESANRDLDVQMQVDSKLVDSTTSATVAALLD
SQEEKIRQRRERVEQWRREREAAKKAEEEAKSQAVSTASQSISTADDQTAQQNNKGWTLD
DDDEDEAMEVDGAPETVNLLPIPKSNDKVESQVLQVRRNPLLGLGNKKSATNNKGKLKSL
VAEEEEKSTTSGLSIKDSGDQMQTDNGEEEDPLDAFMKDVEVEVEQLNEQDKKRAKQVAK
GKNKVDKSEKAIQDEDDAEDEELGSDPEDILALAAKKLKKKDLAAVDHSQIKYEPFRKDF
YIEPPEMHEMTHDQVDLLRVELGGIKIRGVDCPKPIQKWTHAGLPAACLQIIKKLNFEKP
TPIQSQAIPAIMAGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLEQMEGPIAIIMTPTR
ELAVQIHKECKHFLKGLNLRAVCAYGGSPIKDQIAELKRGAEIIVCTPGRMIDLLCANSG
RVTNLKRVTYLVLDEADRMFDMGFEPQVMKIVNNVRPDRQTVLFSATFPRQMESLARKVL
KRPLEITVGGRSVVAQDVAQIVEVREDNTKFVRLLEILGQLYNDDPDARTLIFVDRQEAA
DNLLRDLIRKGYPCMSLHGGKDQLDRDSTIADFKSGVCQLLIATSVAARGLDVKQLKLVI
NFECPNHMEDYVHRVGRTGRAGNKGTAYTFITPEQDRYAMDIVKALKLSGGHVSPELQAL
ADGFQEKVKAGSATYSGSGFGGKGLERLDEARDLVKKAQRKTYDVSDDETSEEEAEDDDH
LMRSVKKEEISTVPDMNPVAIAALKAAQEAAARVNAKNVGASGVQRAKDIIADINARFKE
NSVQGTVPEADKAENAAEYSVEIEINDYPQKARWKVTNKEQISQITELTGAAITTRGTYF
APGRQPAPGSGERKLYLFVEGENEYVVEKAKNEIKRILTETTLSAIEAEARNPGSTSLGG
YGKYSVV
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atggcaagacattctagatctagaagtcgctcacgatctccacataagaggcgaaaacat
tctcacaggcatgatagaaatcgtagtcgtgaacgtgctaaggaaacaacaaatgagaaa
agggatagaagtcgtagtagagaaagacgtagtggacgagatcgcgaacgggatcgagat
cgagatcgagaacgtgaaaaggatcgtcacagagatgatcgagatcataagcgatcccgc
cattcgaggagtgaaattgatagagaagattcttatactaaatctcattccacaaaagaa
acagaagatagaaaatataaaaacaatattacggtagaatctggaaattctacacaagat
caaaaaattatatcgaggtcatcaggtaccgtgctgaacaatgtttctggagaaatgaag
gataaatataaagacattaacaaacaagaaagtgctaaccgagacttggatgtgcaaatg
caggttgattcaaagttagttgattcgacgacctctgcaacagttgcggctttactcgat
agtcaggaagaaaaaattcgtcaaaggagagaacgtgtggaacaatggagaagagaaagg
gaggcggctaaaaaagctgaagaggaggccaaatcacaagcagtttctactgcaagccaa
tctatttctactgctgatgaccaaactgcacaacaaaataataaaggttggactttagat
gacgatgatgaagatgaggctatggaagttgatggcgccccggaaactgtaaatttactt
cctataccaaaatctaatgataaagtagaatctcaggtgcttcaagttaggcgaaaccca
ttacttggacttggcaacaaaaaatctgcgacgaataataagggtaaattaaaaagttta
gttgctgaagaagaagaaaagtctacaacatcagggttatctatcaaagattcaggagat
cagatgcagactgataatggagaggaggaagacccccttgatgcttttatgaaagacgta
gaagttgaagtagaacaattgaatgaacaagacaaaaaacgcgcaaaacaagtggcaaaa
gggaaaaataaagtcgataaatccgagaaagctatacaggatgaagatgatgctgaagat
gaagagcttggtagtgatcccgaagatattttagctttggcagctaaaaaacttaaaaaa
aaagatttggcagcagttgatcattcacaaattaaatatgaacctttcagaaaggacttt
tacattgagcctccagaaatgcatgaaatgacgcatgaccaagtagaccttcttagggtt
gaattgggaggaattaaaatcagaggtgttgattgtccgaaacctatacaaaaatggact
catgcgggtttaccggctgcatgtttgcaaataattaaaaaattaaatttcgaaaagcct
acacccattcaatcacaagcaatacctgcaatcatggctggtcgagacgttattggcgtt
gcaaaaactgggagcggtaaaactatagcatttcttcttccaatgtttcgtcatatcaaa
gatcagcgtcctcttgaacaaatggaaggtcctattgccattattatgacacctacaagg
gaacttgcagttcaaatacataaagagtgtaaacattttttgaaagggttaaatcttagg
gctgtttgtgcttatggtggatcacctattaaagatcaaattgcggaattgaaacgtggc
gctgaaataattgtttgtactcctggtcgtatgattgatttattgtgtgctaattccgga
cgtgttactaatttaaagagagtcacttatcttgtattggatgaagctgatcgtatgttt
gatatgggattcgaacctcaggttatgaaaatagtcaataatgttaggcctgatcgtcaa
acagtcttgttttctgctacttttccacgccagatggagtctctggcacgaaaagttctc
aaaaggccgcttgaaattactgtaggtggacgcagtgttgtagcacaagatgttgctcaa
atagtcgaagttcgcgaagataatacaaaatttgttcgcttacttgaaatattaggtcag
ctatataatgacgatcctgatgctcgtactctaatttttgttgaccgtcaagaggcagca
gataatttattgcgtgatttaatacgaaaaggttacccctgtatgtcccttcatggtggc
aaggatcaattggatcgagatagcacaatagcagatttcaaatccggcgtttgtcagcta
ttaatagccacttctgtagctgcaagaggtcttgacgtaaaacagcttaaattggtcatt
aattttgaatgtccaaatcatatggaagattatgtacatcgcgttggaagaaccggaaga
gctggtaataaaggtaccgcgtatactttcattacaccagaacaagatcgatatgcgatg
gacatagttaaagcattaaaattgagcggtggtcatgttagcccagaattacaagcactt
gccgatggatttcaagagaaggtcaaggcgggaagtgctacgtattctggctcaggattt
ggtggtaaaggtcttgagaggttagatgaagcacgagacctcgttaagaaagcccaaaga
aagacatatgacgtttctgatgatgaaacctctgaggaggaggcagaggatgatgatcac
ctcatgcggtcagtcaagaaagaggaaatttcgactgttcctgatatgaaccctgtagca
attgcggctcttaaagccgctcaagaagctgcagcccgagtcaatgctaagaatgttggt
gcaagtggtgttcaaagagcgaaagacatcattgcagatataaatgctcgctttaaagaa
aactctgtgcaaggcacagtacctgaagccgataaagctgaaaatgctgcagaatattct
gttgaaattgaaattaatgattatccacaaaaggcaagatggaaagttacaaataaggaa
caaatctcacaaattacagaacttacaggagcagctatcactactcgtggtacatatttc
gctcctggtcgtcaaccagcacctggttctggcgaaagaaaattatatttatttgttgaa
ggggaaaatgaatatgttgttgaaaaggccaagaatgaaataaagcgtattttgacagaa
actacgttaagtgcgattgaagccgaagctcgtaatcccggaagtacttcgttgggtgga
tacggcaagtattcggttgtataa
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