Rhizophagus irregularis: OCT59_018598
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Entry
OCT59_018598 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
rie Rhizophagus irregularis
Pathway
rie03013
Nucleocytoplasmic transport
rie03015
mRNA surveillance pathway
rie03040
Spliceosome
Brite
Enzymes [BR:
rie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OCT59_018598
Messenger RNA biogenesis [BR:
rie03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
OCT59_018598
mRNA cycle factors
Stress granule specific factors
OCT59_018598
Spliceosome [BR:
rie03041
]
Complex C
Other components
EJC/TREX
OCT59_018598
Ribosome biogenesis [BR:
rie03009
]
Eukaryotic type
90S particles
Helicases
OCT59_018598
Translation factors [BR:
rie03012
]
Eukaryotic type
Initiation factors
eIF-4
OCT59_018598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
36864474
NCBI-ProteinID:
XP_025185783
LinkDB
All DBs
Position
27:3256991..3259510
Genome browser
AA seq
601 aa
AA seq
DB search
MTDIPKILKAVQDIQASLTVLPEIQTHLAKLTDAVNALRGHDTINVPTATHLFNNVSGSF
VLPNVSPVVDSIESTDEGVNDGKTKSSKDKNEKIQSAFKKENQMNSAESANKTKKKLTLS
ERKKLRKLKKKQVTNQLSPGESSSNELDNKSTPEIQPPVVQDQQLTKDVAPSRVVARPPP
RLHMNRINIAPTGNENGDRLGTRFNRGQSHQSIGYNNQREMLSDNWQQVISTFEEMKLKS
EILRGIRALGYDQPTPIQQRATVAILSRRDAVIQIPRLEERTVTYIAALLQQIETRDKSC
QAIIIVHSKDLCYAIQDLINVAGQYMQFSCLVCTGGIPMREDIEKLRNEGQQIIIGTPGR
LIGLMVDRKFDFNRVKTIIIEDSCIMFNSNFRTQAFDIIYQLPKSAQRVLMTTATTFTLA
DIKNKITKNTIIVLNDVHMSDGLQLYYAVVEKDDQKLNALCEIYKEVNIQKSVIFCDNSE
RVDWLADKLATLFENVAVYSMHSLTRQSERHEIVKSFWESKAALIVTTDCFSSVLAFHPV
DYSVHFDLPYKKEEYHDRLCCCGAYGSPGVAINILVKGQLHDLGVLERYYRLQSQELLGN
R
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatataccaaaaatactaaaagcagttcaagatattcaagcctctttgactgtt
ttacctgaaatccaaactcatctagcaaaacttactgatgctgtaaatgcactacgtgga
catgatacgattaatgtaccaaccgcgacacatttgtttaataatgtgtctggctctttt
gtgttaccaaacgtctctcctgttgtagattctatcgaatcaacggatgaaggagtaaac
gacgggaaaaccaaatcctcaaaagacaaaaatgaaaaaatccaaagtgctttcaaaaaa
gaaaatcagatgaattctgcagaatcagccaacaaaactaagaaaaaattaactttaagc
gaaagaaaaaaattaagaaaattgaagaaaaaacaagttactaaccaattaagcccggga
gagtcttcatccaacgagttggataataaatcaacaccggaaatacaaccgcctgtagta
caggatcaacaactcaccaaagatgttgcaccatcgcgtgtagtagcgcgtcccccacca
cgacttcatatgaatcgcataaatattgctccaactggaaatgaaaacggagatcgcctt
ggaacgagatttaatcgaggccaatcacatcaatcgatcggatataataatcaacgcgaa
atgctttcggataattggcaacaggttatttctacatttgaagaaatgaaattaaaatct
gagattttgcgagggatccgtgcattaggttatgatcaaccgacacctatccagcaacgt
gcaacagtggcgatattatctcgacgggacgctgtaattcaaatacctcgattagaagaa
agaactgtaacttacattgctgctctacttcaacaaattgaaacacgtgacaaatcgtgt
caagcgattataatcgtacattcgaaagacttatgttatgctattcaagatttaatcaat
gtcgcgggtcaatatatgcaattttcatgtttggtttgtactggtggtattccaatgaga
gaggacatagaaaaactaagaaatgaaggacaacaaattataatcgggactccgggcaga
ctaattggactaatggtagatcgtaaattcgattttaatcgcgtcaaaacgattataatt
gaagactcttgtatcatgtttaacagcaattttcgtacgcaagctttcgacattatctat
caattaccaaaaagtgctcagagggttttgatgacaacagctacaacgtttactcttgca
gacattaaaaataagataacgaaaaataccataatcgtccttaatgatgtgcatatgagt
gatgggcttcaactatattacgcagttgtagaaaaagatgatcaaaagctcaatgcttta
tgtgaaatttataaagaagtgaatattcaaaaatctgttatcttctgtgataattcagaa
cgagtcgattggttagctgataaattagcaacattatttgagaacgtggccgtctattcc
atgcattctttaacaagacaatcagaaagacatgaaattgtaaagtctttctgggaatcg
aaagcggctttaattgttactacagattgtttttcatctgttttagcatttcatcccgta
gattatagtgtacactttgatttaccatataaaaaggaagagtaccatgatcgtctttgt
tgttgtggtgcttatggttctccgggagttgctattaacattctcgttaaagggcaatta
catgatcttggagttcttgagcgttattatcgattacaaagtcaagaattgctgggaaat
cgttga
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