Rhizophagus irregularis: OCT59_018742
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Entry
OCT59_018742 CDS
T10295
Name
(RefSeq) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
rie Rhizophagus irregularis
Pathway
rie03040
Spliceosome
Brite
Enzymes [BR:
rie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OCT59_018742
Spliceosome [BR:
rie03041
]
Complex C
Other components
Step II factors
OCT59_018742
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
36884174
NCBI-ProteinID:
XP_025185184
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Position
28:424352..430577
Genome browser
AA seq
1322 aa
AA seq
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MSQPSESENDDFVHQIAIELSRALNLINPNDLLAKNIIQVAKDHKSVETFIKACQGFGRF
KDDFLADLYTTIRKRLKEESDSSSQKADFSSIFNNTTVLGEILTSTGPSVGGLIRPGKLA
SSDDNRHVFKAPAPRTSVLGLDKIAEEKKRAAANKASEDDDKHPAKRINLGIASEWDEDS
VNTTESVDDSKLRGSSSALKSNYRKRTDANSVLDEARNRLEEHKRERDQYTDNHHKKSHH
KDKSDRRDRDDDYGRYESSRSSRRSPSVSSSRNGSSPSVSSSRRSPSVVSSRSRRSPSVA
SSIRDGYSRRTPSTTSWREGSSKRSSSLSPWRDSDRSSSRISRSEWDTTPTTSTSRFSVG
GLTPRKDYKPPRDFPTPRLASFDYDEMEYRDRYNQEEEEDTGEDRDRLEWEEEQKHLDRE
WYNIEESSGALDEEHNPFADYTDYVVKKEQELAQKQLKKLTARQEQYNRDNELWETNRML
TSGIVQRREIDLDFEDDSEARVHLLVHDLKPPFLDGRMVFTKQLEAVQSVKDPTSDMSVF
SRKGSQLVKEKREQIERQKAAKNVAEVAGTALGNIMGIKPTEEDDSAAPRTNEVDMENPK
GDSQFASHLKASEAVSVFARSKTLREQREYLPAFAIREELLRIIRDNQVVVVVGETGSGK
TTQLTQYLHEDGYSKYGTIGCTQPRRVAAMSVAKRVSEEMECKLGTTVGYAIRFEDCTSE
STVIKYMTDGVMLRESLKEPDLDHYSAIIMDEAHERSLQTDVLMGLLRQVLSRRRDIKLI
VTSATMNAEKFSLFFGNCPTFTIPGRTFPVEIMFSKTPCEDYVDSAVKQVLAIHLGHPAG
DILVFMTGQEDIEITCRVIAERLQQLDNPPSLEILPIYSQLPADLQARIFEKTANNARKV
IVATNIAETSLTVDGIMYVVDTGYNKLKVFNPKIGMDSLQITPISQANANQRSGRAGRTG
AGTCYRLYTEQAYHHEMFMNTIPEIQRTNLANVVLLLKSLGVKNLLDFDFMDPPPQDNIL
NSMYQLWILGALDNTGELTPLGRRMVEFPLDPSLSKMLITSEELGCTAEILTIVSMLSVP
SVFYRPKERMEQSDAAREKFFVPESDHLTLLHVYTQWKSHGFREEWCVKHFIHSKAMRKA
QEVRSQLMDIMKAEKMAIVSCGTDWDVVRKCICSAYFHQAARVKGIGEYVNCRTGMPCHL
HPTSALYGLGYTPDYIVYHELVMTSKEYMQCVTAVDPYWLAEMGPMFYSIKEKNFTQKEK
RAANKAEMAKMTMEMQIKMAREKEEEESEQQRKATATPKHSNSVILGKRNPGTPPRKRGF
GL
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaccatctgagagcgaaaacgacgattttgttcaccaaatcgcgatcgagttg
tctagagctttgaatcttataaatcctaacgatcttttagctaagaatatcattcaagtg
gctaaggatcataaaagtgttgaaacgtttataaaagcttgtcagggttttggaaggttt
aaagacgattttttggctgatctatataccactataaggaaacggttaaaagaagagtct
gattcttctagtcagaaggctgatttttcttcaatttttaacaataccacagtgttaggt
gaaatattaacctcaactggcccttcagttggtggtctgatccgtcctggaaaactagca
tcatctgatgataatcgtcatgtttttaaagcccctgcaccaagaacatcagtattagga
ttggacaagatagctgaagaaaaaaaacgtgctgccgcaaataaagcatcagaagatgat
gataagcatccagcaaagagaattaatttaggaatcgcatcagaatgggatgaagactct
gtcaatacaactgagagcgttgatgatagtaaattaagaggatcctcctccgctttgaaa
tcaaattatcgtaaaaggactgatgctaatagcgtactggatgaagctcgtaataggtta
gaagaacataagagggaacgggaccaatatacagataaccaccacaaaaagtcacatcat
aaagataagagtgatagaagggatagggatgatgattatggtcgatacgaatcttccaga
tcaagtcgaaggtcaccttcagtatcttcttcacgaaatggttcgtcgccttctgtttcg
tctagtcgaagatccccatctgtagtatctagccgtagtcgacgttcaccatctgtcgca
tcatcaattcgtgatggttatagtagacgcactccatctactacgtcatggcgtgagggt
tcaagtaaacgatcatcatctttaagtccttggcgagattcagatagaagttcctctaga
ataagtcgcagtgagtgggacaccacacctacaacttcgacttcaaggttttcagttggt
ggtcttacacctcgaaaagattacaagccacccagagattttccaactccacgccttgct
tccttcgactacgatgaaatggaatatagagatcgttataatcaagaagaggaagaagat
actggtgaagatcgtgataggcttgagtgggaggaagaacaaaaacatttggatagagag
tggtataatattgaagaatcatcgggggctctcgatgaagagcacaatcctttcgcagat
tatacagattatgtagtgaaaaaggagcaagaacttgcacaaaaacaacttaaaaaactg
actgcaaggcaagagcagtataacagagacaatgagttatgggaaacaaatcgtatgctc
actagtggtattgttcaacgaagagaaatagatttagattttgaggatgattctgaggct
cgagttcatttacttgttcacgatcttaaaccgccttttcttgacggacgcatggtgttc
acaaagcaattggaagctgtgcaatccgttaaagatcctacttctgatatgtctgttttc
tctagaaaggggagccagcttgtaaaagaaaaaagagaacaaattgagcgtcaaaaggct
gcaaagaatgttgctgaagtagcaggtaccgcacttggtaatattatgggaattaagcca
actgaagaagatgattcggcagcaccgagaacaaatgaagtagatatggaaaatccaaaa
ggagattcacagtttgcttctcatttaaaggcatctgaagcagttagtgtatttgcaaga
tcaaaaactcttcgcgaacaacgtgaatatttaccggcatttgcaattcgagaggaattg
ttaagaattatacgagataatcaagttgtcgtggtcgttggtgaaactggatccggtaaa
actacacaactcactcaataccttcatgaggatggatatagcaaatatggaactataggc
tgtacacagcctcgtcgtgttgctgctatgtcggttgctaaacgtgttagtgaagaaatg
gagtgtaaactcggaactacagttggttacgccattcgtttcgaagattgtacttcagaa
agcaccgttattaaatatatgactgatggtgttatgctccgtgaatcacttaaggaacct
gatctcgatcactacagtgcaattattatggacgaagcccacgaacgttcccttcaaaca
gatgttttgatgggtttattaagacaagttctttctcgcagaagggatattaagttaatc
gtcacgtcagcaactatgaatgccgagaagttttcactgtttttcggaaattgtccgact
ttcacaatacccggtcgtacgttccctgtagagataatgttcagtaagacaccttgcgaa
gattatgttgatagtgctgttaaacaagtgttggcaatccacttagggcatcccgcaggt
gatatattagtatttatgaccggacaagaagatatagagattacatgtcgagtgattgca
gaacgtctccagcaattggataaccctccctcacttgaaattttgccaatctattcgcaa
ttaccagctgacctgcaagctagaattttcgaaaagacagctaacaatgctcgaaaagtt
attgttgcaaccaatattgctgagacctctttgactgttgatggtatcatgtatgttgtt
gacacaggatataataaacttaaggtattcaatccaaagattggcatggactccttacaa
attacacctatcagccaggcaaatgcaaatcaaagatcgggtagagctggacgtactggt
gcaggaacttgttatcgtctttacacggaacaagcttatcatcatgaaatgtttatgaac
acaatacccgagatccagcgtaccaaccttgcaaatgtggtgcttttacttaaatcctta
ggagtaaagaatttattggattttgatttcatggatcctccacctcaggataacatactg
aactcgatgtatcaattgtggattctgggtgcgttggataatactggagagttaacacca
ctcggtcgaagaatggtagagtttccattagatccttcgttatcaaagatgttgattaca
tccgaggaattaggatgtacggcagagatattgaccattgtatctatgctttctgttcca
tcggtattttatcggccaaaagagagaatggagcagagtgatgctgctagagaaaaattc
tttgtacctgaaagtgaccatttaacgctattacatgtttatacacaatggaaatcccac
ggtttccgggaagagtggtgtgtgaaacattttattcattctaaagctatgaggaaagct
caagaagtgagatcacagttaatggatattatgaaagcggaaaagatggcaattgtctct
tgtggcactgattgggatgtagtgcgaaaatgtatctgctctgcatactttcaccaggct
gcaagggtaaagggtattggagaatatgtaaattgccgtacaggaatgccatgccacctt
cacccaacaagtgctttatatgggcttggttatacaccagattacatcgtttatcacgaa
ttagtaatgacgtcaaaggaatacatgcagtgtgttactgctgtagacccatactggtta
gctgaaatgggacctatgttctattcaatcaaagaaaagaatttcacacagaaagaaaaa
cgagcagccaacaaagcagagatggccaaaatgacgatggaaatgcaaattaaaatggcg
agagaaaaagaggaagaagaaagtgaacagcaacgtaaagcaactgcaacacctaaacat
tctaatagtgttatactcgggaaaaggaatcctggaacacccccaagaaaaaggggattt
ggtctctaa
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