Rhizophagus irregularis: OCT59_018796
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Entry
OCT59_018796 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K12850
pre-mRNA-splicing factor 38B
Organism
rie Rhizophagus irregularis
Pathway
rie03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OCT59_018796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rie03041
]
OCT59_018796
Spliceosome [BR:
rie03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
OCT59_018796
Complex C
U4/U6.U5 tri-SnRNP related factors
OCT59_018796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
36871322
NCBI-ProteinID:
XP_066004887
LinkDB
All DBs
Position
28:complement(674749..676820)
Genome browser
AA seq
321 aa
AA seq
DB search
MKQSNKLETWGSETTMNLNNILYQNIQASPYFKHLYELKTYHEVIDEIFNHVESLEPFLK
GTTASTAFCLLYKLWTLRLTVKQVNGLIEHTDSPHIRALGFLYLRYVCKPIHLWEWFEEY
LDDEEEVQIQGGPRPVIITIGKMCRQLLTEQKWLGTILPRIPVPIAREIEQKLKEKSQPP
LPPRRESPTYDLELKRSAERSIRREDDDRNYGRSRSRSAERRSHRVRDYEHERSRRERRD
RDRDSDRDRDRDHRDRRRSRSRSRHRRHRSSSRDRKDRDRRGSHDYDRRGSYDHDRKYDD
DRRRRHDDDRYERRRSRSPRS
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaatcaaataaattagaaacatggggaagcgaaaccactatgaacttaaacaac
attttatatcaaaacattcaagcttcaccttattttaaacatctttatgaattaaaaacc
tatcatgaagttatcgatgaaatttttaatcacgttgagtctctcgaaccttttcttaaa
gggacaacagcatcaactgccttttgtttactttataaactttggactttacgactaaca
gtaaaacaagttaatggattgattgaacataccgattctccacatatacgcgctttaggg
tttctttatcttcgttatgtgtgtaagccaattcatttatgggaatggtttgaggaatat
ttagatgacgaggaagaagtccaaatccaaggcggtcctcgcccagtcattataactatc
ggaaaaatgtgtcgccaattgttaacggagcaaaaatggcttggaactattttacctcgc
attccagtaccaatcgcccgcgaaattgaacaaaagttaaaggaaaagtctcaacctcct
cttccaccaaggagagaatctcctacgtatgatttagaacttaaacgttccgcagaacgt
tctataagacgtgaagatgatgatcgaaattatggacgcagtcgtagccgcagtgctgaa
agaagatctcaccgggttcgagattatgaacatgaacgtagtcgtcgagaacgtagagat
agagatagagatagcgatcgtgaccgtgaccgtgatcaccgcgaccgtcgacgcagtaga
agtcgtagtcgtcacagaagacatagaagttctagtcgcgatcgtaaagatcgggatcgt
cgtggtagccatgattatgatcgtcgtggtagttatgatcacgataggaagtatgacgat
gatcgaagaagaaggcatgatgatgatagatacgaacgtcgtagaagcagaagtccaaga
agttaa
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