Rhizophagus irregularis: OCT59_021475 Help Entry OCT59_021475      CDS       T10295                                  Name (RefSeq) ATP-dependent helicase NAM7   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism rie  Rhizophagus irregularis Pathway rie03013   Nucleocytoplasmic transport rie03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:rie00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     OCT59_021475    03015 mRNA surveillance pathway     OCT59_021475  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:rie03019]     OCT59_021475 Enzymes [BR:rie01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      OCT59_021475     5.6.2.5  RNA 5'-3' helicase      OCT59_021475 Messenger RNA biogenesis [BR:rie03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      OCT59_021475    mRNA cycle factors     Common to processing body (P body) and stress granule      OCT59_021475 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII Viral_helicase1 SLFN-g3_helicase UvrD-helicase DEAD NPHP3_N nSTAND3 Helicase_RecD AAA_22 PhoH ATPase AAA_10 AAA_16 SRP54 ANCHR-like_BBOX Ribosomal_S13_N UvrD_C_2 Motif Other DBs NCBI-GeneID:  36884699 NCBI-ProteinID:  XP_066005681 LinkDB All DBs Position 30:259167..263466 Genome browser AA seq 1063 aa AA seqDB search MERFTTQNTQDDENFSFLEYSGGDTQASQYDYNDFSLESQQTNTLLDGSQSHFVEPDLSG VGVDELDAFQDLAIVERELEHACRYCGIHAVNSVARCVTCNKWFCNSRGNTSGSHIINHL VRAKHREVALHPDSPLGETTLECYSCGCKNVFLLGFIPAKSDTVVVLLCRQPCAAMPSSK DMNWDTSQWLPLIDDRCFLPWLVKVPSEQEQLRARQITAHQINKLEELWKDNTEATLEDL EKPGIDDEPQPVLLRYDDAYQYQNIFGPLVKMEADYDKKLKESQTQDDIVVRWDIGLNQK RIAWFYLPKLESGEVRLAIGDELRLRYRGELRQSWEDVGHVIKIPNNVSDEVGLELRRND NTPVDCTHNFSVDFVWKSTSFDRMQAAMKTFAVDETSVSGFIYHKLLGHEVEPQVLRTVM PKRFSAPNLPELNHSQVYAVKSVLQKNLSLIQGPPGTGKTVTSATIVYHLAKINSGQVLV CAPSNVAVDQLTEKIHATGLKVVRLTAKSREALDSPVSFLTLHEQVYNNDTHVELQKLIQ LKTEQGELSSSDEKKYKTLKRACEREILQTADVILCTCVGAGDPRLSKFKFRTVLIDEAT QATEPECMIPLVLGCKQAVLVGDHQQLGPVIMNKKAARAGLCQSLFERLVILGIRPIRLQ VQYRMHPCLSEFPSNMFYEGSLQNGVTTQDRLKKNVDFPWPAPETPMFFHSNLGQEEISS SGTSYLNRTEASNCEKVVTKFLKSGILPSQIGIITPYEGQRSYVVSYMQFNGPLKKDLYK EIEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGVVILGNPRVL SRHPLWHHLLVHYKDKDCLVEGPLNNLKVSMIAFRGPRRAYRKDDKFRQGFAHQIDAREA FAKAPLAESRRRAYDSDFMRTHDPVSYIPSDMTSMPSSSQFSIPLLPTPNGPFTQDLSQS SVSSRKNAKQQISSYTNSISSQGPLTQNAYSSQGSMSLALSQSDRLRMMENSNNSLGHGS LMSQDSSIGYLDDYKSQGDDTILSQDFEIRSQSGYQSQSFTQY NT seq 3192 nt NT seq  +upstreamnt  +downstreamnt atggaacgatttacaactcaaaacactcaggacgatgaaaatttttcttttttggaatac tctggaggagatactcaagcttcgcaatatgattataacgacttttcacttgaatctcag caaactaacactttgcttgacggttcgcaatcgcatttcgttgagccagatttatctgga gtgggagttgacgagttagacgcgttccaagatcttgccattgttgaaagagaattagaa cacgcatgcagatattgtggtatacacgcagtaaactcagtagccagatgcgtgacttgc aacaaatggttttgtaattctcgtggtaacacttctggctcccatataatcaatcacctt gttcgggcaaaacatagagaagtcgctttacacccggattcaccacttggtgaaacaacg ttggaatgctatagttgtggttgtaagaacgtttttttattgggatttattccagcgaaa agcgatacagttgtagtattgctttgtcgacaaccctgtgccgcaatgcctagtagtaaa gacatgaactgggatacctctcagtggcttcctcttattgatgatcgttgctttcttcca tggcttgttaaagttcccagtgaacaagaacaacttcgggctcgtcaaatcaccgcacat caaattaacaagctcgaggagttgtggaaagataacaccgaagcgactcttgaggatttg gaaaaacctgggattgatgatgaaccacaacctgtattattgagatacgacgatgcctat caatatcaaaacatttttggacctttagtaaaaatggaggctgactatgacaaaaaatta aaggaatctcagacgcaagatgatattgtagttcggtgggatattgggttaaatcaaaag cgtattgcttggttttacttaccaaaacttgaatctggagaggttcgtttggccatcggt gatgaattgagacttcgttatcgtggtgaattgcgtcaatcatgggaggacgttggccat gtgatcaaaataccaaataatgttagtgatgaagttggtttagagttgcgccgtaatgac aatactccagtggattgtacacataatttttcggtagatttcgtatggaaatctactagt tttgatagaatgcaagcagcaatgaaaacatttgctgttgacgagacttcagttagtggc tttatctatcacaagcttttgggacatgaagtagaacctcaagttcttagaacagtaatg ccaaagaggttttcggctccaaatttgccggaattaaatcattcgcaagtatatgccgta aaaagtgttttacaaaaaaatctcagtctcattcaaggtcccccgggtactggcaaaact gttacttcagctaccatcgtttatcatcttgccaagataaattccgggcaagttttagta tgtgcaccttcaaatgttgccgtggaccagttaactgagaaaatacatgcaactgggctt aaagtagttcgtcttactgcaaaatctcgtgaggctcttgattctcccgtatcattcctt acattacacgaacaggtgtataacaatgatactcatgttgaattgcaaaaattgattcaa ctcaagaccgaacaaggagaattaagcagttctgatgagaaaaaatacaaaacgttgaag cgtgcttgtgaaagagaaattttacagactgctgatgttattctttgtacatgcgtgggc gccggagatccacgtttatccaaatttaaatttcgcaccgtcttaattgacgaagcgaca caggcaactgaacctgaatgtatgataccacttgtgcttggatgtaaacaagctgtcctt gttggggaccatcaacaacttggccctgtaataatgaataagaaagctgccagggctggc ttatgtcagtcactttttgagcgcttagtcatattgggtataagacctattagattacaa gttcaatatcgtatgcacccttgtttatcggaatttcctagcaatatgttctacgaaggt tctttgcaaaatggggtcactactcaagatagattaaagaaaaacgtggactttccttgg ccagctccagagacacctatgtttttccactcaaatttaggtcaagaagaaatttcaagc agtggaacctcttatttgaatcgtacggaagcttcaaactgtgaaaaagttgtcacgaag tttctaaaatcaggaattttaccatctcaaataggaataattactccatatgaaggtcaa agaagttatgtcgttagttatatgcagtttaatggtcctttaaaaaaagatttatataaa gaaattgaagtagcaagtgttgatgcctttcaagggcgtgaaaaagattatataatattg agttgtgttcgaagtaatgaacaccaggggattggatttttaaatgatcctagaagactg aatgttgccttgacacgagcgcgttatggtgtcgtaattttgggtaatcctagagttcta agcaggcatcctttgtggcaccatcttcttgtacattataaagataaagattgtttagta gaaggtccgctaaataacttaaaagtcagtatgatagcatttcgagggcctcgtagagct tatcggaaggatgataaatttagacaaggttttgcacaccaaatcgatgcacgcgaagca tttgctaaagctcctcttgctgaaagtcgccgtcgtgcttatgactcagattttatgaga acacatgatcctgtcagttacatcccttcagatatgacttccatgccatcttcgtctcag ttcagcattcccctacttccaacacctaatggtccatttactcaagatttatcacaaagt agtgtttctagcagaaaaaatgccaaacaacaaatttcttcttataccaattcaatctca tcccaaggaccattaacacaaaacgcttatagtagccaaggatctatgagtcttgcacta tctcaatctgatcgtcttcgtatgatggagaactcaaacaattctttaggtcatggctca ctaatgtcacaggatagttcaattggatatttagacgattacaaaagtcaaggagatgac actattttaagtcaagacttcgagattaggtctcaatcaggatatcaatctcaaagtttt acacaatattaa

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