Rhizophagus irregularis: OCT59_023178
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Entry
OCT59_023178 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rie Rhizophagus irregularis
Pathway
rie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCT59_023178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rie03019
]
OCT59_023178
03041 Spliceosome [BR:
rie03041
]
OCT59_023178
03009 Ribosome biogenesis [BR:
rie03009
]
OCT59_023178
03016 Transfer RNA biogenesis [BR:
rie03016
]
OCT59_023178
Enzymes [BR:
rie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OCT59_023178
Messenger RNA biogenesis [BR:
rie03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
OCT59_023178
Spliceosome [BR:
rie03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
OCT59_023178
Complex C
U4/U6.U5 tri-SnRNP related factors
OCT59_023178
Ribosome biogenesis [BR:
rie03009
]
Eukaryotic type
Pre-60S particles
Helicases
OCT59_023178
Transfer RNA biogenesis [BR:
rie03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
OCT59_023178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Tra1_central
nSTAND3
Motif
Other DBs
NCBI-GeneID:
36864441
NCBI-ProteinID:
XP_025185727
LinkDB
All DBs
Position
32:1733001..1738237
Genome browser
AA seq
1219 aa
AA seq
DB search
MSSSEKQQSPSSSTLFSKKRGLSAEKKRSKKNPERKKVKKPKLESPQQSIVTSSISSKDA
TGEIKSKNSKSVLNKNQRAASNDAIEERKMSKKSKDSNTEVVVSETIGKPVQEEEMEEVV
GDILLQQDLVADSQYDEIIQPSLTPDIKQIHIPKVIPHDSIHPVVADTFEHRAIDEPSVG
YLSNNNTAGENVILSHQVRHQVALPPNYPYIPISQHVPLAESARKYPFELDPFQKVAISC
IERNESILVSAHTSAGKTVVAEYAIAQALRDKQRVIYTSPIKALSNQKFRELESKFHDVG
LMTGDVTIRPDASCLVMTTEILLLMLYRGNDLIMREVSWVIFDEIHYMRDKVRGVVWEET
IILLPHQVHFVFLSATIPNAMEFAEWICKMHAQPCHVVYTDFRPTPLQHYIHPSGSNGIF
VILDEKGNFNEDSFRKATGLLQQRNSDIEYINTKKKSKRKKNNEGSKKSKKSKKSKKSKE
STESEQLDSDEPVDINESKDTKEVNESKEEKPGKEISDIRKIVRMIMQNDFYPAIIFSFG
KRECENNALQMGKVTLNNEEEQELVQQVFKNAIETLSEDDRNLPQIEHLIPFLKRGIAFH
HSGLLPVLKEIVELLFQEGLIKILFATETFSMGLNMPAKTVVFTDLKKFDGSANRYITSG
EYIQMSGRAGRRGIDARGIIIIMAREKMDPTIVKGIITGESDNLYSSFHLKYNMILNMTR
VEGISPEYILQRSFYQFQNTACLPVLEEELLRLDEAYASFEIPNEEIIEEYYNIRKLLDT
YAHDMRRVISHPIHSLQWLKPGRLVSIKHADMDFGWGMVVAYGKRKDPRNLNVLNKVTSE
LSTSEIKDDTNKEIQEPQILSPEQYFVDVLLNCEPNSIVAKSAEGKTIGVRPCKENVMGE
VLVAPVELSTIHSISSIRIFPPKILTHNKIRNNLYEQIQKVKNHFPEGIPILDPIEDMHI
RDEDFGKLIRKIEILEAKLFANKLHKTPELPLLYDQYAQKVALSNKIKSLRKKINISNSI
LHLDDLKYRKRLLRRLNYLTDDDVVSLKGRVACHINAGDELVITEMIMNGVFNDMNAEQI
AALLSCFVYENGDKKQHTLKEELYVLYRRLQEVARNIVAVSSECKIDMIEEEYLATFCPD
MMEPVYAWSQGRSFSEVMKVSDSMFEGHVIRTFRMLDELLRGMINAAKDIGDLELEEKFK
LAIEKTRRGIVFAASLYTT
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtagtgaaaaacaacaaagtccctcctcttccactttattttctaaaaaacgc
ggcttaagtgctgaaaagaagcgttctaaaaaaaatcctgaacgtaaaaaggttaaaaaa
ccaaaacttgagagtccacaacaatcaattgttactagcagcatttcaagtaaggatgct
actggagagattaaatcaaaaaactctaaaagtgttttaaataaaaatcaacgagctgct
tctaatgatgccattgaagaaaggaaaatgagtaaaaaatctaaggattctaatactgaa
gttgtagtgtctgaaactatcggaaagcctgtacaagaagaagaaatggaagaagttgtt
ggagatatcttgttacaacaagatttggtagctgattcacaatatgatgaaataatccaa
ccctcgttaactccggatataaagcaaatacatatcccaaaagttattcctcacgattct
atacatccggttgtagctgatacttttgagcatcgtgctattgatgagccatctgttggc
tatttgtcaaataataatacagcaggcgaaaatgtaattctcagtcaccaggttcgtcat
caagtagctctgccacctaattatccctatattcccatttctcaacatgtccctcttgct
gagtctgctcgtaagtatcccttcgaattggatccatttcaaaaggtcgcgatctcttgt
attgaaagaaatgaatccatcttggttagtgcacatacgtcagctggtaaaactgttgtg
gcagaatatgctatagctcaagcattgagggataaacaaagggttatttacacaagccct
ataaaggcactaagtaatcaaaaatttagagaattggaatctaaatttcatgacgtaggt
ctaatgactggagacgtgacaatcagacccgatgcaagttgtttagtgatgaccacagag
attttacttcttatgctttaccgtggaaacgaccttattatgcgtgaagtatcatgggtt
atttttgatgagattcactatatgcgagataaagtgcgtggtgttgtttgggaagaaaca
attattttgttaccccatcaggtccattttgtgtttttatccgcgaccatcccaaatgca
atggaattcgcagaatggatttgtaagatgcacgctcagccatgccacgttgtatatacc
gattttcgccctactccactgcagcattatattcatcctagcggaagtaatgggatattt
gtcatccttgatgaaaagggaaatttcaacgaagatagtttcagaaaagcgaccggctta
ttacagcaaagaaattccgatattgagtatattaatactaagaaaaaatcaaagagaaaa
aagaacaatgaagggtcaaaaaaatccaaaaagtcgaaaaaatccaaaaagtcaaaggaa
tcaacggaatcagaacaactcgattccgacgaacccgtggatataaatgagtcaaaagat
acaaaggaagtaaacgaatcaaaagaagagaaacccggtaaagagatctctgatattcga
aaaattgttagaatgataatgcagaacgatttttatccagctattatttttagttttgga
aagcgagaatgtgaaaacaatgcacttcaaatgggaaaagtaactttaaataatgaggag
gaacaagaattagtacaacaagtatttaaaaatgcaattgaaacgctttccgaagatgat
cgtaatttgccacagattgaacatttgataccattcttgaaacgagggattgcttttcat
cattcagggttattaccagtattgaaagaaatagtcgaacttcttttccaagaaggtctc
ataaagatattatttgcgacagagactttttcaatgggattaaatatgccagctaaaacg
gttgttttcactgacttaaaaaaatttgatggatcggctaatagatatatcacatcaggt
gaatatatccaaatgtctggtcgcgctggtagaagaggtattgatgctagaggaattatc
ataataatggctagagaaaaaatggatcctacgattgttaaaggaataattacgggcgaa
tcagataatctttattcttctttccatttgaagtataacatgattctaaacatgaccaga
gttgaaggtattagtcccgaatacatccttcagcgaagcttttatcagttccaaaatact
gcttgtttgcctgtacttgaagaagaactactacgattggatgaggcttacgcatctttt
gagatacctaacgaagaaattatcgaagaatattataatattcgaaaacttttagacaca
tatgctcatgatatgcgtcgggttattagtcatccgattcatagtctgcaatggttaaaa
ccaggtcgattagtatcaataaaacatgcggatatggatttcggatggggcatggttgtc
gcttatggcaaaagaaaggatccaaggaatttaaacgttttaaataaagtaacgtcagag
ctatcgacgtctgaaataaaggatgatacaaataaagaaattcaagaaccccaaatctta
tcaccagaacaatattttgttgatgttttactcaattgcgagccaaattctattgttgca
aagtcggctgaagggaaaaccatcggtgttagaccatgcaaagagaatgtaatgggagaa
gttttggttgctcccgttgaattatctacaatacattctattagttcaatccgtattttt
ccgcctaagattcttacgcacaataagattagaaataatttgtatgaacaaattcaaaaa
gtaaagaatcatttcccggaaggtataccgatcctggatccgatagaagatatgcacatt
cgagatgaagattttggaaagttaattaggaaaattgaaatccttgaggcaaagcttttt
gctaacaaactccataaaacaccagagcttccattattatatgatcaatacgctcagaaa
gttgctttaagtaataaaataaaaagtttaagaaaaaagatcaatatatctaactctata
ttgcatctcgatgatcttaaatatcgaaaacgattattaagacgacttaattatttgaca
gatgatgatgttgtttcgttgaaagggcgtgttgcttgtcatatcaatgctggtgatgaa
ttagtaattaccgaaatgattatgaatggtgtctttaatgatatgaatgcagagcaaata
gctgctttattaagctgttttgtatatgaaaatggtgataaaaaacaacatacacttaaa
gaagaattatatgtgctttatcgtagattacaagaagtggcacgtaatatagttgctgtt
tctagtgagtgtaaaatagatatgatagaagaagaataccttgcgacattttgtcctgac
atgatggagcctgtatatgcatggtctcaaggaagatcattttctgaagtcatgaaagtt
tccgattccatgttcgaaggacatgttattagaacttttcgtatgttggatgaattgttg
cgaggaatgattaatgcagcaaaagatatcggtgatttagaactagaagaaaagtttaaa
ttagctattgaaaagactaggcgtggtatagtttttgcggcatctttatatactacttaa
DBGET
integrated database retrieval system
