Rhizophagus irregularis: OCT59_024909
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Entry
OCT59_024909 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
rie Rhizophagus irregularis
Pathway
rie03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OCT59_024909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rie03041
]
OCT59_024909
Spliceosome [BR:
rie03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
OCT59_024909
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Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
DOCK_N
Acetate_kinase
pYEATS
TUG-UBL1
Motif
Other DBs
NCBI-GeneID:
36865645
NCBI-ProteinID:
XP_025182975
LinkDB
All DBs
Position
5:1738099..1740542
Genome browser
AA seq
491 aa
AA seq
DB search
MSNMNNDQKIVPKRDLSDDAEAMIEDNDDITQPDTKRIRVGTSANSSSDLYLDTINRHML
DFDFEKVCSVSLSNLNVYACLVCGKYFQGRGRQSHAYFHSLHEDHHVFINLHTLKVYVLP
DGYEVKDPSLNDIRYVLHPTFTKEQVANLDQNIRQSYDLNNKKYLPGFVGLNNVKANDYV
NVIIQALAHIPPLRDYFILQNLETRSQLVQRFSTLVRKIWNPKAFKGQVSPHELLQEIVN
ASNKKFKLSEQSDPLEFLSWFLNTLHKDLGGIKKQNSSIIHRIFQGEVKVEEQSLITKEN
ADEEDRLLFDVDREISVKKFPFLFLTLDLPAPPLFKDEVEKNIIPQVALTTILAKYDGRA
AHESAGTLKRFQLTRLPNYIIFHIKRFTKNNWSEEKNPTIVNFPIKNIDMSEYLENPDEE
KFNTHYDLIANICHEGKPGKGNGIYKVHVQHRGKDQWYQIQDLIVEEINAQMIFLSESYI
QIWERKQQDLY
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatatgaataatgatcaaaaaatagttccaaagcgtgatttgagtgatgatgca
gaagctatgatcgaagacaatgatgatataactcaacctgatacaaaaagaattcgtgtc
ggaacttcggctaatagctctagcgatctctacctagacactataaaccgtcatatgttg
gactttgatttcgaaaaggtctgctcagtttctttatcaaacttaaatgtatatgcgtgt
ttggtgtgtggtaaatacttccaaggacgaggacgtcaatctcacgcgtacttccatagc
ttacatgaggatcaccatgttttcattaatttacatacccttaaggtatatgttttacct
gatggatatgaagtcaaggatccatcattgaatgatattagatatgtacttcatccaacc
tttacaaaagaacaagtcgcgaatttggatcaaaatataagacaatcatacgatttaaat
aataaaaaatacttgccaggttttgtaggcctcaataatgtaaaagctaatgattatgtt
aatgtcataatacaagcgctggcacacattccaccgcttcgggattacttcatcttacaa
aatctcgaaactagatctcaattagtgcaaagattcagtactctggttagaaaaatttgg
aatcctaaggcattcaaaggccaagtcagtccacacgagttacttcaggaaattgttaac
gcaagtaacaaaaaattcaaactttctgaacaaagtgatcctcttgaatttctgtcttgg
tttttgaatacattacacaaggatttgggtggaatcaagaaacaaaattcaagcataatt
catagaatatttcaaggagaagttaaagttgaagaacagtcgcttattacaaaagaaaat
gccgatgaagaagatcgactattatttgatgttgacagggaaatttcggtcaaaaaattc
ccttttctttttttgacattggatttacctgcgcctcctttatttaaggatgaagttgaa
aagaatattattcctcaagttgccttgacaacgatactcgctaaatatgacggtcgtgct
gctcatgagtcggccggaactttgaaaaggtttcaattgactcgattaccaaattatatc
atttttcatatcaaacgttttactaagaacaattggtctgaagagaaaaatcctactatt
gtcaacttcccaatcaaaaatatcgatatgagcgaatatcttgaaaatccagatgaagaa
aaatttaatactcattatgatttaattgcgaacatttgtcacgaaggtaagccgggtaaa
ggtaatggaatttataaagttcatgttcaacatcgtggaaaagatcaatggtatcaaatc
caagatttaattgtcgaagaaattaacgcacaaatgatctttttatccgaaagttatatt
cagatatgggaaagaaaacaacaggacttatattaa
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