KEGG   Rhizophagus irregularis: OCT59_025011
Entry
OCT59_025011      CDS       T10295                                 
Name
(RefSeq) uncharacterized protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
rie  Rhizophagus irregularis
Pathway
rie03018  RNA degradation
rie03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rie00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OCT59_025011
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OCT59_025011
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rie03019]
    OCT59_025011
   03041 Spliceosome [BR:rie03041]
    OCT59_025011
Messenger RNA biogenesis [BR:rie03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     OCT59_025011
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     OCT59_025011
Spliceosome [BR:rie03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    OCT59_025011
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 36859326
NCBI-ProteinID: XP_025186650
LinkDB
Position
5:complement(2224599..2225269)
AA seq 156 aa
MYTETKNSREVSNNSCDKKNECNKNLKGNNRDNLPMKKPKNNHSTKKYTKKGGILDLNKY
LGEKVLVKFHGGREAMGILRGFDALFNLVLDNVDERLRDREDWHLLNETRSLGLLVCRGT
TVILISPAEGMKEISNPFLKDDSVQADDNNNDVKEE
NT seq 471 nt   +upstreamnt  +downstreamnt
atgtatacagaaactaaaaattcgcgcgaagtatcaaataattcttgtgataaaaaaaat
gaatgtaataaaaatttaaaaggaaataatcgggataatttgcctatgaagaaacctaaa
aataatcattccactaaaaaatatacgaaaaaaggaggaattcttgatcttaataagtat
cttggagaaaaagttttagttaaatttcatggtggtcgtgaagcaatgggtattttaaga
ggattcgacgccttgtttaaccttgtacttgataatgtggatgaacgacttagagatcgc
gaggactggcatcttttaaatgaaactagatcacttggattactcgtctgtcgtgggacg
actgtgattcttatttcaccagctgaaggaatgaaagaaatttctaacccattcttgaaa
gatgattcagtacaagccgatgataataataacgatgtcaaagaagaataa

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