Rhizophagus irregularis: OCT59_026147
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Entry
OCT59_026147 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rie Rhizophagus irregularis
Pathway
rie03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
OCT59_026147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rie03021
]
OCT59_026147
03019 Messenger RNA biogenesis [BR:
rie03019
]
OCT59_026147
Transcription machinery [BR:
rie03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
OCT59_026147
Messenger RNA biogenesis [BR:
rie03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
OCT59_026147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
zf-CCHC_2
zf_CCCH_4
zf-CCCH
zf-CCCH_2
PD-C2-AF1
Motif
Other DBs
NCBI-GeneID:
36859889
NCBI-ProteinID:
XP_025168236
LinkDB
All DBs
Position
6:1842115..1842960
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AA seq
139 aa
AA seq
DB search
MPKCAHYRLYGVCNSINCIYSHDKVESERCNWYDRGFCRKGLTCNKKHVKQIACQLYLTG
FCPRGPSCPNGHPKMDLTDKHRGISFFNKNVYNEMMDLIKEGGDDFQENIRAKSYNLPYK
NVTCFNCGKKGHLARNCPA
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaatgtgcacattatagattatatggtgtatgtaattcaataaattgcatttat
tcgcatgataaagttgaatctgaaagatgtaattggtacgatcgtggattctgtagaaaa
ggtctaacatgtaataagaaacatgtaaaacaaattgcctgtcaattgtacttgaccgga
ttttgtcctcgtggaccttcttgccctaatggacaccctaaaatggatttaaccgataaa
catcgcgggatttcgttcttcaataaaaacgtatataacgagatgatggatttaatcaag
gagggtggtgacgattttcaagaaaacatacgagctaagagttataatttaccttataag
aatgttacttgttttaattgtggaaagaagggtcatctggcaagaaactgtcccgcttaa
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