Rhizophagus irregularis: OCT59_027619
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Entry
OCT59_027619 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K10884
ATP-dependent DNA helicase 2 subunit 1
Organism
rie Rhizophagus irregularis
Pathway
rie03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OCT59_027619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rie03041
]
OCT59_027619
03400 DNA repair and recombination proteins [BR:
rie03400
]
OCT59_027619
Spliceosome [BR:
rie03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
OCT59_027619
DNA repair and recombination proteins [BR:
rie03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
OCT59_027619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku_N
Ku
Ku_C
VWA_2
Motif
Other DBs
NCBI-GeneID:
36859706
NCBI-ProteinID:
XP_065993531
LinkDB
All DBs
Position
7:complement(3962725..3966015)
Genome browser
AA seq
640 aa
AA seq
DB search
MTSSNTITSSWASLSDRDQDEFDAEEDIEEEAKKLMTSNRDAVLFVIDASSSMLRANQSD
EATEIPFRSAVQCASEVMTSKLISDTTTDLIGVVFMGTQKSSNTLQKEHIYVLHSLDSPD
IQRVKELNYIASGDVDFDNEYGSTDDEYPIGDVFWVCSELFNKETSKTLKTKRIFLITDQ
DNPHVSNSVLYSTAITRARDLTESGIQINLFSLNKPDHPFDFNAFYSEIIHSDELDEIPH
YSAQKNFDSLISQIMAKESPRRSLFSIPFRLFGGDEGIPELTIGVKGYAMIIEKKKPAPR
MIHMRSETTRLAESRTKYVCMDTVQELMPDDIKYCYEYGGEKIAFTKAEVAELRRFGQKG
LNLIGFKPSNAAKFHYNVEHALFLYPDEGQFEGSRRTFAALHKKMLEMSKVAICYLVKRD
NSLPSFVVLEAQAEKLDEDKRQIFPPGFNMIPLPFADDIRPLPPHAEITPAPDEMIDILK
PIVDKLHMKGGFDPNKFNNPELGRFYDVLQALAFDKEVPLGVEDLTNPKYTTINKRVGSI
IEAFNDESDRQSVELLANRMTIQSKKTSTTRGTRGTRGTTRGSGSSDSIDIKSLWEQDKL
KTATVDQLKTYVQTTGAKPARLKADLINQVEEYLSSKSSN
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgacatcttcgaacacgattacaagttcttgggcttcattgtctgatagagatcaagat
gaatttgacgcggaagaagacattgaagaagaagcaaagaagcttatgactagcaataga
gatgctgttttatttgtaatcgatgcatcttcctcaatgctaagagcaaatcaatctgat
gaagctacagagattccgtttcgttcagcagttcaatgtgcttcagaagtaatgacttct
aaacttatatccgatactactactgatcttattggtgtagtgtttatgggaacgcaaaaa
tcatcaaatacacttcaaaaagaacatatctatgttctccatagtcttgattcgcctgat
attcagagagttaaagaattaaactatattgcatcaggtgatgttgatttcgataatgaa
tatggtagtaccgatgatgaatatccaattggcgatgtattttgggtttgcagtgaatta
ttcaataaagagacttctaagactctaaaaacaaaaaggatattcttgattactgatcaa
gataaccctcatgtgtcaaattcagttttatacagcactgcgataactcgcgcaagagat
ttgaccgaatctggtatccaaatcaatctgttcagcttaaataaaccggatcatcctttt
gactttaatgcattctattcggaaattattcacagtgatgaattggatgagattccccac
tacagtgcacaaaaaaatttcgatagtcttatttctcaaataatggctaaagaatcacca
agaagatctttgttctcgattccatttcgcctatttggaggggatgagggaatacctgaa
cttaccattggtgttaaaggatatgctatgatcattgagaaaaagaaaccggcgccaaga
atgatacacatgagatcagaaacaacaagacttgccgaatctagaacaaaatacgtttgt
atggatacagttcaagaattgatgcctgacgatataaaatattgctatgaatacggaggc
gaaaagatagcattcaccaaagctgaagttgctgaattaagaagattcggccaaaagggt
cttaatcttatcgggtttaagccttcgaatgctgctaaatttcattataatgttgaacat
gcattgtttttatatcctgatgaaggacaatttgaaggtagcagaagaacatttgcggca
ttacataaaaaaatgctagaaatgagcaaagtggctatatgttatcttgtcaaacgggat
aactctctcccctcttttgtcgtactagaagcccaagctgaaaaattagatgaagataaa
cgacagatatttcccccgggatttaacatgatacccctcccgtttgctgatgatatcagg
ccacttccgccccacgctgaaattacacctgctcctgatgagatgattgatatcctaaag
ccaattgttgataaactacatatgaaaggcggatttgatcccaataaattcaataatccc
gaattgggacgtttctacgatgtattgcaagctctggcatttgataaggaagttccactg
ggcgttgaggatttgacaaatccaaaatatacaacgataaataagcgtgttggatcgatt
attgaggcatttaatgacgagtcagatcgacagagtgtagaattgcttgccaaccgaatg
accattcaatctaaaaaaacatcaacaactcgtggaactcgcggaactcgcggaactact
cgtggatctggttcatctgattctatagatataaaatcattgtgggaacaagacaagctt
aaaacggccacagtagatcaattaaaaacatatgttcagaccactggagcaaagcctgct
cgtttgaaagctgatttaattaatcaagttgaagaatatttatcatctaaatcatctaat
taa
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