Rhizophagus irregularis: OCT59_027898
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Entry
OCT59_027898 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
rie Rhizophagus irregularis
Pathway
rie03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
OCT59_027898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rie03019
]
OCT59_027898
Messenger RNA biogenesis [BR:
rie03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
OCT59_027898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
HBS1_N
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
AAA_22
Inhibitor_I53
Motif
Other DBs
NCBI-GeneID:
36860003
NCBI-ProteinID:
XP_065993703
LinkDB
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Position
7:complement(5248529..5253071)
Genome browser
AA seq
989 aa
AA seq
DB search
MSRHRVVRSLNAADILAETENYDYDYDDYDDENYEMTPEDKAQMDKGKMFVRNVIGQVEG
ISDKDIENALWNYYYNTEDTIAYLLDEVHKSKANKKSQKKLGSNKTIPVKKDLLSNVDHG
KRYPSPVVFGANQRNPESHHLLENKTRTIFANCVSPNDIWMGHDVKWCSLTPNKLMFAEN
SIHEMQQNLHYGGLLGGADSEKPKSTQSKLSSLHSQLDSTNDMFSTRTTNEHKRFSVRIN
NNIDSQLNVGESSFSKPEIRSSELSLSSLAQLNMKQSIRPSLSSMATNTTLKLESSKSQT
SSSLQLNSQAPSLSSLAQKSILQSSGRVSLTRLASKKLDNRSPLQKTMTPIISKQSKTLS
SDTNCLHDSTTLSSSSEIVNEVSQTIMNDQISEITQSKEFIQNSHQLLLNPHIAPPSIFA
TSIFEQLQDNLVPSNDLITFELNTAGSNNSGFAFNTPSPDDTALKAQRQRNTGTLKDKAK
QDVSSTSSNASASSPILKTAQKPESKEKQLTTVLLEEDNGAEVLYDNNVDKQLRFDMEAL
NLNVENTSSKKVTKLPPKISPKHKRINVLEEYKKRNDNKVALNLVVVGHVDAGKSTLMGH
LLYLLGEVNEKTMKKYERDSSKIGKSSFAYAWILDETGEERARGITMDIAITKFETEHRR
FTLLDAPGHRDFIPNMISGAAQADVAILVIDSTTGEFEAGFEANGQTKEHALLVRSLGVQ
QLVVAINKLDVVGWSQDRFNEIITNGLTGENLLKRSQNILEWYSGPTLFQQIDKFEPPIR
LLDKPFRLSVSDFFKGGISGMGGITVAGKIEAGTIQIGDDVLVIPGGEYGVIKGLEANDE
SSKWAAAGDSILMTLSGLDILQLKVGSILCSVSHPVPVTSYILAQIVVFDIKVPITKGFP
VILHRQSLNEPAIITKLVTILDKSTGEIVKKNPRCLPKASSATVEIKLTNRPVPFETYKE
NKELGRIMLRKGGETIAAGIIINILSYNS
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacatagagtggttagaagcctgaatgctgcagatatacttgcagaaacagag
aattatgactatgattatgacgattatgatgatgaaaattatgaaatgactccggaagat
aaagcacaaatggacaaagggaaaatgtttgttagaaatgttatcggacaagtagaaggg
atatctgataaagatatcgaaaatgctttatggaattattattataatacagaggataca
atagcgtacttattagacgaggttcataaatccaaagcaaataaaaaatcacaaaagaaa
ttgggttctaataaaactattcccgtaaagaaagatctattgtctaatgtggatcatggg
aaacgatatccgagccctgtggtctttggtgcaaatcagcgaaatcctgaaagtcaccat
ttattagaaaacaaaactagaactatttttgcaaattgtgtttcccccaatgacatttgg
atgggacatgacgtaaaatggtgtagtcttactcctaataaattaatgtttgcagaaaat
tcaattcatgaaatgcaacaaaatttgcattatggcgggttactaggtggtgcagattct
gaaaagcccaaatcaacacaatcgaaactctcgagtttgcatagccagttggattccact
aatgatatgttttcaactagaacgacaaatgaacataaacgtttctcagtcagaattaat
aataatattgatagccagctcaacgtaggagagtcttcattttcgaaacctgagatacgc
tcatctgaactatcactgtcatctctggctcagttgaatatgaaacaatcaattaggcca
tcattatctagcatggcaacaaataccacgttaaaattagagtcatccaaatctcaaact
tcttctagcttgcagttgaacagtcaagctccatctttatcatctctagctcaaaaatct
attttacagtcttctggacgtgtttctttaactagacttgcgtcaaaaaaattagataat
agatccccattgcaaaaaacaatgacccctataatttccaaacaatcaaaaactttatca
tctgatacaaattgcttgcatgattcaacaacattatcttcatcaagcgaaatagttaat
gaggtgtctcagactataatgaatgaccaaatttcagaaattactcaatctaaggaattc
attcagaattcacatcaattattattaaatcctcatattgcaccgccatccattttcgct
acttccatatttgaacaacttcaagataatctagtgccttctaatgatttaattactttt
gaacttaacacagcaggctcaaacaatagtgggtttgcttttaatacaccaagccctgat
gatactgctttgaaggcacaacgtcaaagaaatactggtacattaaaagataaagccaaa
caagatgtttcttctacatcatcaaatgcttcagcatcaagtcccatattaaaaacagca
caaaagccagaatccaaagaaaaacaacttacaactgttttacttgaagaagataacggc
gctgaagttttatatgataataatgttgataaacaactgagatttgatatggaagcgctt
aatcttaacgttgaaaatacctcttctaaaaaagtaacaaaattgccaccaaaaatatca
cctaagcataagcgtattaatgttcttgaagaatacaagaaacggaatgataataaagtg
gcattaaatttagtggttgttggacatgttgatgcaggaaaaagtacactaatgggtcac
ttattgtatttacttggtgaagtcaatgaaaagactatgaaaaaatatgaaagagactct
tcaaaaattggaaagtcatcttttgcgtatgcgtggattcttgatgaaacgggtgaagaa
cgtgccagaggtatcacaatggatattgcaatcaccaaatttgaaactgaacatagaaga
tttacattattagatgctccagggcatcgagattttattccaaatatgatttcgggagca
gctcaggcagatgttgctattcttgtaatcgattctactactggtgaatttgaagctgga
tttgaagcaaatggtcaaacaaaagaacatgcattacttgttagaagtttgggtgtacaa
caattggttgtagcaattaataaattagacgttgtaggttggtcacaagatcggtttaat
gagatcataaccaatggattgacaggagaaaatttgttaaagagatctcaaaatattttg
gagtggtattctggaccaactttatttcaacaaatagataagtttgaacctcctatacga
cttttagataaaccatttcgactttcagtttcagatttttttaaaggaggaataagtggt
atgggaggtattactgttgctggaaaaatagaagcaggaactattcagattggagatgat
gttttggttattcctggtggtgaatatggtgtaataaaaggtttggaagcaaatgatgaa
tcttcaaaatgggcagctgctggagattctattttaatgacattatctggattagacatt
ctccaacttaaagttggatctattttgtgttcagtatcacatccagttcctgtaacatca
tatattttagcacaaattgttgtatttgatattaaagttccaattacaaaaggatttcct
gttattcttcatagacaaagtcttaatgaaccggctattataaccaaattagttactatt
ttagataaaagtacaggagaaattgtaaagaaaaatccaagatgtcttcctaaagcatca
tctgctactgttgaaattaaacttactaatagaccagttccttttgaaacttataaggaa
aataaagaattaggaagaattatgttaagaaaaggtggagaaacaattgctgctggtatt
attattaatatattatcatataattcttaa
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