Rhizophagus irregularis: OCT59_028942
Help
Entry
OCT59_028942 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K03140
transcription initiation factor TFIID/TFIIF subunit
Organism
rie Rhizophagus irregularis
Pathway
rie03022
Basal transcription factors
rie03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OCT59_028942
09126 Chromosome
03082 ATP-dependent chromatin remodeling
OCT59_028942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rie03021
]
OCT59_028942
03036 Chromosome and associated proteins [BR:
rie03036
]
OCT59_028942
Transcription machinery [BR:
rie03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
OCT59_028942
Coactivators
SWI/SNF complex
OCT59_028942
Chromosome and associated proteins [BR:
rie03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NuA3 complex
OCT59_028942
Chromatin remodeling factors
INO80 complex (yeast)
OCT59_028942
SWI/SNF complex
OCT59_028942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YEATS
pYEATS
BET
Motif
Other DBs
NCBI-GeneID:
36878190
NCBI-ProteinID:
XP_025169041
LinkDB
All DBs
Position
8:4891134..4892811
Genome browser
AA seq
272 aa
AA seq
DB search
MSDTNQSIVEKEIVVVTDQEISKHLKPTNGLPMRKWKVSIFAIDDMAEHCPLNYVERVEY
ILHPTFEPPERVVRKPPFTLSEKGWGEFDMKITLYFTDKTIIPFTFFHDLNFKKSHYEVP
HKLTFTDPKPTFQLLLFHEKSDESYSSMPKPNKKKTKSSLNASIKRQKNDTSGSPSYESG
NSSRSPCSTSESTNDKENYKVDYQKLARNLYALDEDDILEVIQIVNDHRSDDMYINEDTE
GEFHIDLYTLGDELLRTLWDFTESKLDQISSI
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacaaaccagtcaatagttgaaaaagagattgtagttgtaaccgaccaggag
atatcaaagcatttgaagccaactaatggtcttccaatgcgtaagtggaaggtttcgatc
tttgcaattgacgatatggcagaacattgtcctctaaattacgttgaaagagttgaatat
atcttacatccaacatttgaacctcctgaaagagtggtgcggaaacctccatttacactt
tctgaaaaaggttggggcgagtttgatatgaagataacattatattttacagataaaacc
attattccttttactttttttcatgatcttaatttcaaaaaatctcattatgaagttcct
cacaaactaacttttacggatccaaaaccaacatttcagttgttgctttttcacgaaaaa
tctgatgaatcgtattcgtctatgcccaagcctaataaaaaaaagacaaaatcatcactt
aatgcttccattaaacgacaaaaaaatgatacatctggatcgccaagttatgaatctggt
aattcttcgcgatcaccgtgttctactagtgaatccacgaatgataaagagaattataag
gtagattatcaaaaattagcaagaaatctttatgcattggatgaggatgacatactcgaa
gtaatacaaattgtcaatgatcatcgttcagatgacatgtacataaatgaagatacagaa
ggagaatttcacatagatttatacaccctcggtgatgaattattgagaacactgtgggat
tttactgaatcaaaattagaccaaatttcatctatttaa
DBGET
integrated database retrieval system