KEGG   Rhizophagus irregularis: OCT59_028955
Entry
OCT59_028955      CDS       T10295                                 
Name
(RefSeq) Spliceosome RNA helicase BAT1
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
rie  Rhizophagus irregularis
Pathway
rie03013  Nucleocytoplasmic transport
rie03015  mRNA surveillance pathway
rie03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rie00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OCT59_028955
  09122 Translation
   03013 Nucleocytoplasmic transport
    OCT59_028955
   03015 mRNA surveillance pathway
    OCT59_028955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rie03019]
    OCT59_028955
   03041 Spliceosome [BR:rie03041]
    OCT59_028955
Enzymes [BR:rie01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     OCT59_028955
Messenger RNA biogenesis [BR:rie03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     OCT59_028955
Spliceosome [BR:rie03041]
 Complex C
  Other components
   EJC/TREX
    OCT59_028955
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    OCT59_028955
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 36872257
NCBI-ProteinID: XP_025167519
LinkDB
Position
8:complement(4945441..4948677)
AA seq 433 aa
MADDLIDYEEEDESMQTDAPSAEQPTGNGQELSEDNTKDKKGSYVGIHSTGFRDFLLKPE
LLRAIVDCGFEHPSEVQQECIPQSILGMDVLCQAKSGMGKTAVFVLATLQQVEPAPGEVS
VIVLCHTRELAFQIRSEYTRFSKYMPEIKTDVFYGGVPIRDDYKKFSSKETTPHIVVGTP
GRILALVNDGQLKVGSVKHFVLDECDKMLDQLDMRRDVQAIFRKTPHNKQVMMFSATLSK
EIRPVCKKFMQNPLEIYVDDETKLTLHGLQQHFIKLPETSKNRKLNDLLDTLEFNQVCIF
VKSVQRANELNKLLCDCNFPSICIHGAMKQEERIAKYKSFKDFQKRIMVATDVFGRGIDI
ERVNIVINYDMPDGPDTYLHRVGRAGRFGTKGLAITFVANQEDADTLNKVQERFEVNITE
LPTELEINDYMAS
NT seq 1302 nt   +upstreamnt  +downstreamnt
atggccgacgatttaattgactatgaagaagaggatgagtccatgcaaaccgatgccccc
tctgcagaacaacctactggtaacggacaagaattatccgaggacaatacgaaagataag
aagggaagttacgttggtattcactcaaccggcttcagggatttcttgttgaagcctgaa
ttgcttagagctattgtagattgtgggtttgaacatccgtcagaagtgcaacaggagtgt
attcctcagtcgatccttggtatggatgttctttgtcaagctaaatccggtatgggaaag
actgccgtcttcgttttagctacgcttcaacaagtagagcctgctccaggcgaagtatca
gttatcgtactatgtcatactcgtgaattggccttccaaattcgaagcgaatatactcgt
ttcagcaagtacatgccggaaataaagacagatgtgttttacggcggtgttcctattaga
gatgattataagaaattttcgagcaaagagactacgcctcacattgttgttggaacaccc
ggaaggattttggctttagtaaacgatggccaattgaaagtgggtagtgttaaacatttt
gtgcttgatgaatgtgacaaaatgttggatcaattggatatgagacgagatgttcaggca
attttccgcaagactcctcataacaaacaagtcatgatgtttagtgctacacttagcaaa
gaaattagacctgtctgtaagaagttcatgcaaaacccgttagaaatttatgttgatgat
gaaactaaactcactcttcacgggcttcaacaacattttatcaaattgcctgaaacctct
aagaatcgcaaattaaatgatttgcttgatacacttgaatttaatcaagtatgcatcttt
gttaaatcagttcaacgagctaatgagttaaataaacttctttgcgattgtaacttcccg
agtatttgtattcacggagcaatgaaacaagaggagagaattgccaaatataaatcgttt
aaagacttccaaaagcgaataatggttgctactgatgtctttggtcgtggtattgatatt
gagcgtgtgaatatagttatcaattatgatatgcctgatggtccagatacatatttacat
agggtcggtcgtgcgggtcgtttcggtaccaaaggtctcgctattacattcgtagcaaat
caagaagatgccgatacactaaataaagtgcaagaacgatttgaagtcaatattactgaa
ctaccgactgaactagagatcaatgactatatggcatcgtga

DBGET integrated database retrieval system