Rhizophagus irregularis: OCT59_029519
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Entry
OCT59_029519 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K10752
histone-binding protein RBBP4
Organism
rie Rhizophagus irregularis
Pathway
rie03082
ATP-dependent chromatin remodeling
rie03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
OCT59_029519
03083 Polycomb repressive complex
OCT59_029519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rie03036
]
OCT59_029519
Chromosome and associated proteins [BR:
rie03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
OCT59_029519
Histone modification proteins
HAT complexes
HATB complex
OCT59_029519
HDAC complexes
Sin3A-HDAC complex
OCT59_029519
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
OCT59_029519
PRC2.2
OCT59_029519
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
OCT59_029519
Heterochromatin formation proteins
Other heterochromatin formation proteins
OCT59_029519
Chromatin remodeling factors
NuRD complex
OCT59_029519
NuRF complex
OCT59_029519
NuRF complex (fruit fly)
OCT59_029519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML
EIF3I
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
eIF2A
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_DCAF4
MIOS_WD40
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
36868882
NCBI-ProteinID:
XP_065994742
LinkDB
All DBs
Position
9:2108672..2110799
Genome browser
AA seq
439 aa
AA seq
DB search
MMTTSNSDSPSSPNNEESTEETKQERAAIEEKIVNEEYKIWKKNSPFLYDLVITHALEWP
TLTCQWFQDIEKPEGKDYTIQRLLIGTHTSDNDQNYVEIANVQLPKSDSDIDPRKYEEEK
AEAGAHGESRITVVQRINHDGEVNRARYMPQDQNIIATKTVTGDVYIFDLTKHPSRPLAE
GVCNPELKLRGHTKEGYGLSWSPFDKGHILDASEDTTICHWNINGNTRETRTMEPFRVYR
GHEAIVEDVAWHTKDPHIFGSVGDDQKLLIWDVRPDRADKPVHSIIAHQSEVNSLAFNPH
NDFILATGAGDKTLSLWDLRNLKIKLHTLEQHTGEIVQVEWSPHDETILASAAGDRRVNI
WDLSRIGSEQTAEDAEDGPPELLFMHGGHTNKISDFSWNPHLPWVVASAAEDNIIQVWQP
AANIYTIDEREIPADELED
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccacatctaatagtgattcgccttcctccccaaataatgaagaatccactgag
gaaacgaaacaagaacgtgcggctatagaagaaaagatagttaacgaggaatataaaata
tggaagaaaaactcgccatttctttatgatttggttattactcacgcgcttgaatggcct
acactaacgtgtcagtggtttcaagatatagaaaaacctgaaggaaaagattatacaatt
caacgcttattaattggcactcatacatcagataatgatcaaaattatgttgaaatcgct
aacgtacaacttccaaagagtgattccgatattgatcctcgaaaatatgaagaagaaaaa
gcagaagcaggtgcacatggtgaaagtcgaataacagttgttcagaggataaatcatgac
ggcgaagttaacagagcgcgatacatgcctcaagatcaaaatataattgcaacaaagact
gtaactggagatgtatatatatttgatcttacaaagcatccatctaggcctcttgcagaa
ggagtttgtaaccctgaactaaaattgcgaggacatacaaaagaaggatatgggttatct
tggagtccatttgataaaggtcatattttagatgcttcagaggatactactatttgtcat
tggaatattaatggaaatacaagagaaacaagaacaatggagccatttagagtttatcga
ggacatgaagcaatcgtcgaggatgttgcgtggcatacgaaagacccacatatttttggt
tctgtaggggacgaccaaaaactacttatttgggatgtgcgtccagatagagccgataaa
ccagtacattcaattatcgctcaccaaagtgaagttaatagtttagcattcaatccgcat
aatgatttcattttggcaactggtgcaggtgataagaccttaagtttatgggatctacgt
aatcttaaaattaagttacatacacttgaacagcataccggtgagattgttcaagttgaa
tggtcaccgcatgacgagacaattctcgcatctgctgcaggtgatcgtagagttaatata
tgggatttaagtagaatcggttcagaacaaacggctgaagatgctgaagatggtccgcca
gaattattgtttatgcacggtggacacactaataagatttcggattttagttggaatcct
catcttccttgggttgttgccagcgctgcagaagataatattatccaagtgtggcaaccg
gctgcgaatatctatactattgatgaaagggaaattccagctgatgaattagaagattaa
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