Rhizobium indigoferae: U5G49_000243
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Entry
U5G49_000243 CDS
T09660
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rif
Rhizobium indigoferae
Pathway
rif03420
Nucleotide excision repair
rif03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U5G49_000243
03430 Mismatch repair
U5G49_000243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rif03400
]
U5G49_000243
Enzymes [BR:
rif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U5G49_000243
DNA repair and recombination proteins [BR:
rif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U5G49_000243
MMR (mismatch excision repair)
Other MMR factors
U5G49_000243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
HHH
AAA_12
Motif
Other DBs
NCBI-ProteinID:
WQN35218
LinkDB
All DBs
Position
complement(237612..239672)
Genome browser
AA seq
686 aa
AA seq
DB search
MYLEKLNPQQRMAVEHGTLIDGSHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRI
LLMTFSRRAAAEMARRVERICRDVLGANAGVMADALSWSGTFHGIGARLLRDYAQQIGLD
PDFTIHDREDSADLMNLIRHDLGFSKTESRFPTKGTCLAIYSRAVNSETALDLVLRDVFP
WCAAWEKQLRELFASYVEAKQSQNVLDYDDLLLYWAQMVGEAVIAEDIGSRFDHVLVDEY
QDTNRLQASILLALKPGGQGLTVVGDDAQSIYSFRAATVRNILDFPAAFSPAANIVTLDR
NYRSTQPILAAANAVIDLASERFTKNLWTERQSSERPRLVTVRDEAEQARYVADMVLDNR
EEGLTLKQQAVLFRASHHSGPLEVELTRRNIPFVKFGGLKFLDSAHVKDMLAALRFAQNP
RDRVAGFRLMQILPGVGPSTAQKTLDLMAEDASPITALGAMPAPPRSGEDWTMFVSMLQE
LKTGKAGWPAEIGLARQWYAPHLERLHEDAATRQADLLQLEQIAGGYASRERFLTELTLD
PPDATSDQAGVPHLDEDYLILSTIHSAKGQEWTRVFMLNVVDGCIPSDLAVGTTAEIEEE
RRLLYVAMTRARDGLDLVVPQRFFTYGQNSQGDRHVYASRSRFIPATLLQFFEACSWPQV
KSGSVAQQQARQVRIDVGARMRGMWR
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtatctcgaaaagctcaatccgcagcagcgcatggccgtcgagcacggcacgctcatc
gacggcagccatattgccgggccgctgctggtcattgccggcgccggctcgggcaagacg
aataccttggcgcatcgggtcgctcatctgatcgtcaagggcgccgatccccgccgcatc
ctgctgatgaccttctcgcgccgggcagccgccgagatggcgcggcgcgtcgagcgcatc
tgccgcgatgtgcttggtgcgaatgccggcgtcatggcggatgcgctttcctggtccggc
accttccatggcatcggcgcgcggctgttgcgcgattatgcccagcagatcggcctcgac
ccggatttcaccatccacgaccgcgaagacagcgccgatctgatgaacctgatccggcac
gacctcggtttctcaaagacggaaagccgttttcccacaaagggcacctgccttgccatc
tattcccgggcggtgaattcggagaccgcgctcgacctcgtgctgcgcgacgtctttccc
tggtgcgcggcgtgggaaaaacagttgcgcgaacttttcgccagctatgtcgaggccaag
cagagccagaacgtgctcgactacgacgatctgctgctctactgggcgcagatggtcggc
gaggctgtcattgccgaggatatcggcagccgcttcgaccatgtgctcgttgatgaatat
caggacaccaaccggctgcaggcctcgatcctgctggcgctgaagcccggcggccagggg
ctaaccgtcgtcggtgacgatgcgcagtcgatctattccttccgcgccgcgacggtgcgc
aatatcctcgattttccggccgccttcagcccggccgccaatatcgtcacgctcgaccgc
aactaccgctcgacgcagccgatcctcgccgccgccaacgccgtcatcgatctcgcctcg
gagcgcttcaccaagaatctctggaccgagcggcaatcatccgagaggccgcgcctcgtc
acggtgcgcgacgaggccgagcaggcgcgctacgtcgccgacatggtgctcgacaaccgc
gaggaaggcctcacgctcaagcagcaggccgtgctcttccgcgcctcgcaccacagcggg
ccgctggaggtcgagttgactcggcgcaacattcccttcgtcaaattcggcgggctgaag
tttctcgacagcgcgcatgtgaaggacatgctggccgcccttcgcttcgcgcagaacccg
cgcgaccgtgtggcgggcttccggctgatgcagatcctgccgggcgtcgggccgtcgacg
gcgcagaagacgctcgacctgatggccgaggatgccagcccgattactgctcttggcgcc
atgccggcgccgccgcgttccggcgaagactggacaatgttcgtctcgatgctgcaggag
ctgaagaccggcaaggccggctggccggcggaaatcggcctggcgcggcaatggtacgcg
ccgcatctggaacggctgcacgaggacgcagcgacgcggcaggccgacctgctgcagcta
gagcagatcgccggcggttatgcctcgcgcgagcgctttctcaccgagctcacgcttgat
ccgccggatgcgaccagcgaccaggcgggcgtgccgcatctcgacgaagactatctcatc
ctgtcgaccatccattccgccaagggccaggaatggacgagggtcttcatgctgaacgtc
gtcgacggctgcataccgagcgatctcgccgtcggcaccaccgccgaaatcgaagaggag
cgccgcctgctttatgtcgccatgacccgcgccagggatggtctcgaccttgtcgtgccg
caacgcttcttcacctatgggcagaactcgcagggcgaccggcacgtctatgcctcacgc
agccgcttcattccggcaacgctgctgcagttcttcgaggcctgcagctggccgcaggtg
aaatctggcagcgtcgcccaacagcaggcgcggcaggtgcgcatcgatgtcggcgcccgc
atgcgcggcatgtggcgataa
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