Rhizobium indigoferae: U5G49_001176
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Entry
U5G49_001176 CDS
T09660
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase subunit omega
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
rif
Rhizobium indigoferae
Pathway
rif03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rif00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U5G49_001176 (rpoZ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rif03021
]
U5G49_001176 (rpoZ)
03400 DNA repair and recombination proteins [BR:
rif03400
]
U5G49_001176 (rpoZ)
Enzymes [BR:
rif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U5G49_001176 (rpoZ)
Transcription machinery [BR:
rif03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U5G49_001176 (rpoZ)
DNA repair and recombination proteins [BR:
rif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U5G49_001176 (rpoZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
Coatomer_E
MinE
Motif
Other DBs
NCBI-ProteinID:
WQN36115
LinkDB
All DBs
Position
1144209..1144613
Genome browser
AA seq
134 aa
AA seq
DB search
MARVTVEDCIDKVENRFELVLLASHRARLISQGASITIDRDNDKNPVVALREIADETLSP
DDLKEDLIHSLQKHVEVDEPEPDPASMIAAGSVAAADSEEQDDLPETITFDQMSEEELLA
GIEGLVPPEKSDDY
NT seq
405 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtgtcacagttgaagattgcatcgacaaggtggagaaccgcttcgagctggtt
ctgctcgccagccaccgcgcccggctgatttcccagggtgcctcgatcaccatcgatcgt
gacaatgacaagaatcccgttgtggccctgcgcgaaatcgccgacgagacgctttcgccc
gacgacctcaaggaagatctgatccattcgctgcagaagcatgtcgaagtcgacgagccc
gagcccgatccggcaagcatgatcgccgccggcagtgtcgccgcagccgacagcgaagag
caggacgacctgccggagacgatcactttcgaccagatgtcggaagaagagctgcttgcc
ggcatcgaaggcctcgtgccgccggaaaagagcgacgactactaa
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