Rhizobium indigoferae: U5G49_001290
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Entry
U5G49_001290 CDS
T09660
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rif
Rhizobium indigoferae
Brite
KEGG Orthology (KO) [BR:
rif00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rif03016
]
U5G49_001290 (rnd)
Enzymes [BR:
rif01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
U5G49_001290 (rnd)
Transfer RNA biogenesis [BR:
rif03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
U5G49_001290 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
wHTH-Calcineurin_assc
Motif
Other DBs
NCBI-ProteinID:
WQN36229
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All DBs
Position
complement(1259236..1260381)
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AA seq
381 aa
AA seq
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MIETTADLAAACKELAKSDFITIDTEFLRETTFWPELCLIQMASPTTEVLVDPLAKGIDL
APFFELMADPKVLKVFHAARQDIEIIFNRGNLIPHPIFDTQVAAMVCGFGDSVSYDQLVS
RIKNVHIDKSSRFTDWSRRPLSDKQLDYALADVTHLRDVYLSLKAELDREGRTSWLSEEM
DILESRETYDMHPDDAWQRLKMRLRKPQELAILKYVAAWREREARARNVPRSRVLKDDAI
YEIAQQQPKDTEALGRLRTIPKGWERSTSGAAVIEAVNTALALPKADMPHVPRQAQAPEG
AAAAVELLKVLLKLISEKHGVAPKVIANSEDLDRIAAEGEKAEVAALHGWRRDLFGEPAL
QLIQGAIALRFVDRKVETVSL
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaaaccaccgccgatttggcggccgcctgcaaagagctggccaagtccgacttc
atcaccatcgacaccgaattcctgcgcgaaacgaccttctggccggagctctgcctgatc
cagatggcaagcccgacgacggaagttctcgtcgatccgctggccaagggcatcgatctc
gcccccttcttcgagctgatggccgatccgaaggtgctgaaggtctttcacgcggcgcgc
caggacatcgaaatcatcttcaatcgcggcaatctcattccgcatccgatcttcgacacg
caggtcgccgccatggtctgcggcttcggcgacagcgtctcctatgaccagttggtcagc
cgcatcaagaacgtccatatcgacaagtcgtcgcgcttcaccgactggagccgccggccg
ctctcggacaaacagctggattatgcgctggctgacgtcacccacctgcgcgacgtctac
ctgtcgctgaaggcggaactcgatcgcgagggccgcacctcctggctctccgaggaaatg
gacattctcgagtcgcgcgaaacctacgacatgcatcccgacgatgcttggcagcggctg
aagatgcgtctgcgcaagccgcaggagctggcgatcctgaaatatgtcgccgcctggcgc
gaacgcgaggcgcgggctcgcaacgtgccgcgttcgcgggtgctgaaggatgatgcgatc
tacgagatcgcccagcagcagccgaaggataccgaggcgctcggccgtctgcgcaccatt
ccgaagggttgggagcgctcgacttccggcgcagcagtcatcgaggccgtcaacacggcg
cttgctcttccgaaggccgatatgccgcatgtgccacgccaggcgcaggcgcccgaaggg
gccgctgctgccgtcgaattgttgaaggtgctgctgaagctgatttcggaaaaacacggc
gtggcgccgaaggtgatcgccaacagcgaggatctcgacaggattgccgccgagggcgag
aaggccgaagtcgctgccctgcacggctggcggcgcgatcttttcggcgagccggcactc
cagctgatccagggcgcaatcgccttgcgtttcgtcgaccggaaagtcgaaaccgtcagc
ctctga
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