Rhizobium indigoferae: U5G49_001385
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Entry
U5G49_001385 CDS
T09660
Symbol
hupB
Name
(GenBank) DNA-binding protein HupB
KO
K03530
DNA-binding protein HU-beta
Organism
rif
Rhizobium indigoferae
Brite
KEGG Orthology (KO) [BR:
rif00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rif03032
]
U5G49_001385 (hupB)
03036 Chromosome and associated proteins [BR:
rif03036
]
U5G49_001385 (hupB)
03400 DNA repair and recombination proteins [BR:
rif03400
]
U5G49_001385 (hupB)
DNA replication proteins [BR:
rif03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
U5G49_001385 (hupB)
Chromosome and associated proteins [BR:
rif03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
U5G49_001385 (hupB)
DNA repair and recombination proteins [BR:
rif03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
U5G49_001385 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
DUF2267
HU-CCDC81_euk_2
HU-CCDC81_euk_1
CcFV1_CP
Motif
Other DBs
NCBI-ProteinID:
WQN36316
UniProt:
A0ABZ0ZA23
LinkDB
All DBs
Position
1353517..1353792
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AA seq
91 aa
AA seq
DB search
MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG
RNPSTGAEVDIPARNVPKFTPGKGLKDAVNG
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaatgaactcgtgtccgcagtagccgaaaaggcaggactgacgaagtctgac
gcggcttccgctgttgacgcggttttcgacgttgtccaggctgaactcaagaacaagggc
gacatccgcctcgcgggtttcggcagcttcaccgtttctcatcgtgccgcaacgaagggc
cgtaatccgtcgacgggcgctgaagtcgacattccggctcgcaacgtgcccaaattcacg
cccggcaagggcctgaaggacgccgtcaacggctga
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